Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26427 | 5' | -60.8 | NC_005345.2 | + | 36338 | 0.69 | 0.259771 |
Target: 5'- aGGCGaacCGgcGGGCCGAgcGGCUCgGGCGg -3' miRNA: 3'- -CCGUa--GCa-CCCGGCUgaCCGAG-CCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 33005 | 0.69 | 0.266274 |
Target: 5'- gGGUggCGgGGGCguCGACgaucgGGCUCGGCc -3' miRNA: 3'- -CCGuaGCaCCCG--GCUGa----CCGAGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 8930 | 0.69 | 0.286572 |
Target: 5'- cGGCGgccgccccCGUGGGCgGGCUGcggguGCUCGGg- -3' miRNA: 3'- -CCGUa-------GCACCCGgCUGAC-----CGAGCCgc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 3843 | 0.69 | 0.278991 |
Target: 5'- cGGCggCGUGcggacccGGCUGAUcGGCgUCGGCGu -3' miRNA: 3'- -CCGuaGCAC-------CCGGCUGaCCG-AGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 39835 | 0.7 | 0.247156 |
Target: 5'- cGGCAUCGcGGGCuCGGCcGGCcgcaccUGGCa -3' miRNA: 3'- -CCGUAGCaCCCG-GCUGaCCGa-----GCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 18976 | 0.7 | 0.229188 |
Target: 5'- cGCcgCaUGGGUCGccGCUGGC-CGGCGg -3' miRNA: 3'- cCGuaGcACCCGGC--UGACCGaGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 13141 | 0.7 | 0.217832 |
Target: 5'- uGCGUCaaggGGGCUGACgccgaguccGCUCGGCGg -3' miRNA: 3'- cCGUAGca--CCCGGCUGac-------CGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 37728 | 0.7 | 0.217832 |
Target: 5'- uGCggCGcGGcGCCGGCUGG-UCGGCGu -3' miRNA: 3'- cCGuaGCaCC-CGGCUGACCgAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 37656 | 0.71 | 0.211793 |
Target: 5'- cGGCGUCGgugcGGGCCGcCUGcGCggcccugaugucgUCGGCc -3' miRNA: 3'- -CCGUAGCa---CCCGGCuGAC-CG-------------AGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 32056 | 0.71 | 0.186621 |
Target: 5'- cGGguUCGaguucGGGCuCGACcucgGGCUCGGCc -3' miRNA: 3'- -CCguAGCa----CCCG-GCUGa---CCGAGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 27185 | 0.71 | 0.186621 |
Target: 5'- gGGCAUCGgcgcGGGCCGugaucggcaGC-GGgUCGGCGc -3' miRNA: 3'- -CCGUAGCa---CCCGGC---------UGaCCgAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 19113 | 0.72 | 0.181819 |
Target: 5'- cGGCccacgCGUGGgcGCCGAUccGCUCGGCGa -3' miRNA: 3'- -CCGua---GCACC--CGGCUGacCGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 40765 | 0.72 | 0.177127 |
Target: 5'- cGGC-UCGUcGGGCCGGucGGC-CGGCGc -3' miRNA: 3'- -CCGuAGCA-CCCGGCUgaCCGaGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 34917 | 0.72 | 0.177127 |
Target: 5'- aGGCAgCGUGGGCCGGaucaaGGC-CGGUu -3' miRNA: 3'- -CCGUaGCACCCGGCUga---CCGaGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 14676 | 0.73 | 0.155249 |
Target: 5'- cGGCGUCGccgaugccGGGCCGGCcgugcccgUGGUguggCGGCGa -3' miRNA: 3'- -CCGUAGCa-------CCCGGCUG--------ACCGa---GCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 30040 | 0.74 | 0.118375 |
Target: 5'- cGGCGcccacgCGUGGGCCGACgacaccgacGGCgagcucaUCGGCGa -3' miRNA: 3'- -CCGUa-----GCACCCGGCUGa--------CCG-------AGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 38380 | 0.76 | 0.08311 |
Target: 5'- cGGCugucUCGacGGCCGGCaggGGCUCGGCGu -3' miRNA: 3'- -CCGu---AGCacCCGGCUGa--CCGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 45062 | 1.09 | 0.000275 |
Target: 5'- gGGCAUCGUGGGCCGACUGGCUCGGCGc -3' miRNA: 3'- -CCGUAGCACCCGGCUGACCGAGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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