miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26427 5' -60.8 NC_005345.2 + 45062 1.09 0.000275
Target:  5'- gGGCAUCGUGGGCCGACUGGCUCGGCGc -3'
miRNA:   3'- -CCGUAGCACCCGGCUGACCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 38380 0.76 0.08311
Target:  5'- cGGCugucUCGacGGCCGGCaggGGCUCGGCGu -3'
miRNA:   3'- -CCGu---AGCacCCGGCUGa--CCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 30040 0.74 0.118375
Target:  5'- cGGCGcccacgCGUGGGCCGACgacaccgacGGCgagcucaUCGGCGa -3'
miRNA:   3'- -CCGUa-----GCACCCGGCUGa--------CCG-------AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 14676 0.73 0.155249
Target:  5'- cGGCGUCGccgaugccGGGCCGGCcgugcccgUGGUguggCGGCGa -3'
miRNA:   3'- -CCGUAGCa-------CCCGGCUG--------ACCGa---GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 40765 0.72 0.177127
Target:  5'- cGGC-UCGUcGGGCCGGucGGC-CGGCGc -3'
miRNA:   3'- -CCGuAGCA-CCCGGCUgaCCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 34917 0.72 0.177127
Target:  5'- aGGCAgCGUGGGCCGGaucaaGGC-CGGUu -3'
miRNA:   3'- -CCGUaGCACCCGGCUga---CCGaGCCGc -5'
26427 5' -60.8 NC_005345.2 + 19113 0.72 0.181819
Target:  5'- cGGCccacgCGUGGgcGCCGAUccGCUCGGCGa -3'
miRNA:   3'- -CCGua---GCACC--CGGCUGacCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 32056 0.71 0.186621
Target:  5'- cGGguUCGaguucGGGCuCGACcucgGGCUCGGCc -3'
miRNA:   3'- -CCguAGCa----CCCG-GCUGa---CCGAGCCGc -5'
26427 5' -60.8 NC_005345.2 + 27185 0.71 0.186621
Target:  5'- gGGCAUCGgcgcGGGCCGugaucggcaGC-GGgUCGGCGc -3'
miRNA:   3'- -CCGUAGCa---CCCGGC---------UGaCCgAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 37656 0.71 0.211793
Target:  5'- cGGCGUCGgugcGGGCCGcCUGcGCggcccugaugucgUCGGCc -3'
miRNA:   3'- -CCGUAGCa---CCCGGCuGAC-CG-------------AGCCGc -5'
26427 5' -60.8 NC_005345.2 + 13141 0.7 0.217832
Target:  5'- uGCGUCaaggGGGCUGACgccgaguccGCUCGGCGg -3'
miRNA:   3'- cCGUAGca--CCCGGCUGac-------CGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 37728 0.7 0.217832
Target:  5'- uGCggCGcGGcGCCGGCUGG-UCGGCGu -3'
miRNA:   3'- cCGuaGCaCC-CGGCUGACCgAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 18976 0.7 0.229188
Target:  5'- cGCcgCaUGGGUCGccGCUGGC-CGGCGg -3'
miRNA:   3'- cCGuaGcACCCGGC--UGACCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 39835 0.7 0.247156
Target:  5'- cGGCAUCGcGGGCuCGGCcGGCcgcaccUGGCa -3'
miRNA:   3'- -CCGUAGCaCCCG-GCUGaCCGa-----GCCGc -5'
26427 5' -60.8 NC_005345.2 + 36338 0.69 0.259771
Target:  5'- aGGCGaacCGgcGGGCCGAgcGGCUCgGGCGg -3'
miRNA:   3'- -CCGUa--GCa-CCCGGCUgaCCGAG-CCGC- -5'
26427 5' -60.8 NC_005345.2 + 33005 0.69 0.266274
Target:  5'- gGGUggCGgGGGCguCGACgaucgGGCUCGGCc -3'
miRNA:   3'- -CCGuaGCaCCCG--GCUGa----CCGAGCCGc -5'
26427 5' -60.8 NC_005345.2 + 3843 0.69 0.278991
Target:  5'- cGGCggCGUGcggacccGGCUGAUcGGCgUCGGCGu -3'
miRNA:   3'- -CCGuaGCAC-------CCGGCUGaCCG-AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 8930 0.69 0.286572
Target:  5'- cGGCGgccgccccCGUGGGCgGGCUGcggguGCUCGGg- -3'
miRNA:   3'- -CCGUa-------GCACCCGgCUGAC-----CGAGCCgc -5'
26427 5' -60.8 NC_005345.2 + 35225 0.68 0.30077
Target:  5'- aGGCGgcCGUGGG-CGGCUGGUagucgucgaUgGGCGg -3'
miRNA:   3'- -CCGUa-GCACCCgGCUGACCG---------AgCCGC- -5'
26427 5' -60.8 NC_005345.2 + 33471 0.68 0.30077
Target:  5'- cGGCAgaUCGgccGGCCGAC-GGUgcaggUCGGCGc -3'
miRNA:   3'- -CCGU--AGCac-CCGGCUGaCCG-----AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.