miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26427 5' -60.8 NC_005345.2 + 2027 0.68 0.315504
Target:  5'- cGGCGuccUCGUcgagcGGGcCCGGCgcGGCcCGGCGg -3'
miRNA:   3'- -CCGU---AGCA-----CCC-GGCUGa-CCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 2578 0.66 0.388433
Target:  5'- uGC-UCG-GGGCCGA--GGCUgaCGGCGa -3'
miRNA:   3'- cCGuAGCaCCCGGCUgaCCGA--GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 3843 0.69 0.278991
Target:  5'- cGGCggCGUGcggacccGGCUGAUcGGCgUCGGCGu -3'
miRNA:   3'- -CCGuaGCAC-------CCGGCUGaCCG-AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 4447 0.67 0.362932
Target:  5'- aGGUcgUGUGGaggcuCCGGCgggGGCcCGGCGg -3'
miRNA:   3'- -CCGuaGCACCc----GGCUGa--CCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 7026 0.66 0.433461
Target:  5'- cGgGUCGccGGUCGACcGGC-CGGCGa -3'
miRNA:   3'- cCgUAGCacCCGGCUGaCCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 8930 0.69 0.286572
Target:  5'- cGGCGgccgccccCGUGGGCgGGCUGcggguGCUCGGg- -3'
miRNA:   3'- -CCGUa-------GCACCCGgCUGAC-----CGAGCCgc -5'
26427 5' -60.8 NC_005345.2 + 11599 0.67 0.346588
Target:  5'- cGGUggCGUGGGgCGgccGCUGGCgggagugGGCGg -3'
miRNA:   3'- -CCGuaGCACCCgGC---UGACCGag-----CCGC- -5'
26427 5' -60.8 NC_005345.2 + 13141 0.7 0.217832
Target:  5'- uGCGUCaaggGGGCUGACgccgaguccGCUCGGCGg -3'
miRNA:   3'- cCGUAGca--CCCGGCUGac-------CGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 14676 0.73 0.155249
Target:  5'- cGGCGUCGccgaugccGGGCCGGCcgugcccgUGGUguggCGGCGa -3'
miRNA:   3'- -CCGUAGCa-------CCCGGCUG--------ACCGa---GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 15922 0.68 0.315504
Target:  5'- cGguUCGggGGGCCGGCUcuGCUCGuGUGa -3'
miRNA:   3'- cCguAGCa-CCCGGCUGAc-CGAGC-CGC- -5'
26427 5' -60.8 NC_005345.2 + 16599 0.66 0.397192
Target:  5'- cGGUggCGUGGcCCGACccccucGGCgUCGGCa -3'
miRNA:   3'- -CCGuaGCACCcGGCUGa-----CCG-AGCCGc -5'
26427 5' -60.8 NC_005345.2 + 18976 0.7 0.229188
Target:  5'- cGCcgCaUGGGUCGccGCUGGC-CGGCGg -3'
miRNA:   3'- cCGuaGcACCCGGC--UGACCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 19113 0.72 0.181819
Target:  5'- cGGCccacgCGUGGgcGCCGAUccGCUCGGCGa -3'
miRNA:   3'- -CCGua---GCACC--CGGCUGacCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 20588 0.67 0.346588
Target:  5'- gGGCccaaaucCG-GGGCCGGCgGGCgcucgcaagucUCGGCGa -3'
miRNA:   3'- -CCGua-----GCaCCCGGCUGaCCG-----------AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 22090 0.66 0.415083
Target:  5'- aGGUuccGUUGacGGUCGGC-GGCUCGGUGg -3'
miRNA:   3'- -CCG---UAGCacCCGGCUGaCCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 27185 0.71 0.186621
Target:  5'- gGGCAUCGgcgcGGGCCGugaucggcaGC-GGgUCGGCGc -3'
miRNA:   3'- -CCGUAGCa---CCCGGC---------UGaCCgAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 28525 0.67 0.338615
Target:  5'- cGCAgacguUCG-GGGgCGACgaucagucgUGGCUCGGCu -3'
miRNA:   3'- cCGU-----AGCaCCCgGCUG---------ACCGAGCCGc -5'
26427 5' -60.8 NC_005345.2 + 29947 0.67 0.371302
Target:  5'- cGGCucgacGUCG-GGGCCGuCgGGCUCGuCGu -3'
miRNA:   3'- -CCG-----UAGCaCCCGGCuGaCCGAGCcGC- -5'
26427 5' -60.8 NC_005345.2 + 30040 0.74 0.118375
Target:  5'- cGGCGcccacgCGUGGGCCGACgacaccgacGGCgagcucaUCGGCGa -3'
miRNA:   3'- -CCGUa-----GCACCCGGCUGa--------CCG-------AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 32056 0.71 0.186621
Target:  5'- cGGguUCGaguucGGGCuCGACcucgGGCUCGGCc -3'
miRNA:   3'- -CCguAGCa----CCCG-GCUGa---CCGAGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.