Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26427 | 5' | -60.8 | NC_005345.2 | + | 34917 | 0.72 | 0.177127 |
Target: 5'- aGGCAgCGUGGGCCGGaucaaGGC-CGGUu -3' miRNA: 3'- -CCGUaGCACCCGGCUga---CCGaGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 16599 | 0.66 | 0.397192 |
Target: 5'- cGGUggCGUGGcCCGACccccucGGCgUCGGCa -3' miRNA: 3'- -CCGuaGCACCcGGCUGa-----CCG-AGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 22090 | 0.66 | 0.415083 |
Target: 5'- aGGUuccGUUGacGGUCGGC-GGCUCGGUGg -3' miRNA: 3'- -CCG---UAGCacCCGGCUGaCCGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 7026 | 0.66 | 0.433461 |
Target: 5'- cGgGUCGccGGUCGACcGGC-CGGCGa -3' miRNA: 3'- cCgUAGCacCCGGCUGaCCGaGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 3843 | 0.69 | 0.278991 |
Target: 5'- cGGCggCGUGcggacccGGCUGAUcGGCgUCGGCGu -3' miRNA: 3'- -CCGuaGCAC-------CCGGCUGaCCG-AGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 8930 | 0.69 | 0.286572 |
Target: 5'- cGGCGgccgccccCGUGGGCgGGCUGcggguGCUCGGg- -3' miRNA: 3'- -CCGUa-------GCACCCGgCUGAC-----CGAGCCgc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 2027 | 0.68 | 0.315504 |
Target: 5'- cGGCGuccUCGUcgagcGGGcCCGGCgcGGCcCGGCGg -3' miRNA: 3'- -CCGU---AGCA-----CCC-GGCUGa-CCGaGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 45062 | 1.09 | 0.000275 |
Target: 5'- gGGCAUCGUGGGCCGACUGGCUCGGCGc -3' miRNA: 3'- -CCGUAGCACCCGGCUGACCGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 30040 | 0.74 | 0.118375 |
Target: 5'- cGGCGcccacgCGUGGGCCGACgacaccgacGGCgagcucaUCGGCGa -3' miRNA: 3'- -CCGUa-----GCACCCGGCUGa--------CCG-------AGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 11599 | 0.67 | 0.346588 |
Target: 5'- cGGUggCGUGGGgCGgccGCUGGCgggagugGGCGg -3' miRNA: 3'- -CCGuaGCACCCgGC---UGACCGag-----CCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 28525 | 0.67 | 0.338615 |
Target: 5'- cGCAgacguUCG-GGGgCGACgaucagucgUGGCUCGGCu -3' miRNA: 3'- cCGU-----AGCaCCCgGCUG---------ACCGAGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 13141 | 0.7 | 0.217832 |
Target: 5'- uGCGUCaaggGGGCUGACgccgaguccGCUCGGCGg -3' miRNA: 3'- cCGUAGca--CCCGGCUGac-------CGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 20588 | 0.67 | 0.346588 |
Target: 5'- gGGCccaaaucCG-GGGCCGGCgGGCgcucgcaagucUCGGCGa -3' miRNA: 3'- -CCGua-----GCaCCCGGCUGaCCG-----------AGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 18976 | 0.7 | 0.229188 |
Target: 5'- cGCcgCaUGGGUCGccGCUGGC-CGGCGg -3' miRNA: 3'- cCGuaGcACCCGGC--UGACCGaGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 35907 | 0.68 | 0.323073 |
Target: 5'- cGGCAUCGUcGGG-UGGCUcgGGacgCGGCGa -3' miRNA: 3'- -CCGUAGCA-CCCgGCUGA--CCga-GCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 33705 | 0.66 | 0.391921 |
Target: 5'- cGGC-UCG-GGGCCGucgcgggcgagguguACgccaagGGCUaCGGCGa -3' miRNA: 3'- -CCGuAGCaCCCGGC---------------UGa-----CCGA-GCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 37855 | 0.66 | 0.433461 |
Target: 5'- cGGUcgGUCGc-GGCCGGCgaGGCUCaGGCc -3' miRNA: 3'- -CCG--UAGCacCCGGCUGa-CCGAG-CCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 39835 | 0.7 | 0.247156 |
Target: 5'- cGGCAUCGcGGGCuCGGCcGGCcgcaccUGGCa -3' miRNA: 3'- -CCGUAGCaCCCG-GCUGaCCGa-----GCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 33471 | 0.68 | 0.30077 |
Target: 5'- cGGCAgaUCGgccGGCCGAC-GGUgcaggUCGGCGc -3' miRNA: 3'- -CCGU--AGCac-CCGGCUGaCCG-----AGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 14676 | 0.73 | 0.155249 |
Target: 5'- cGGCGUCGccgaugccGGGCCGGCcgugcccgUGGUguggCGGCGa -3' miRNA: 3'- -CCGUAGCa-------CCCGGCUG--------ACCGa---GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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