Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26427 | 5' | -60.8 | NC_005345.2 | + | 35771 | 0.66 | 0.397191 |
Target: 5'- gGGCGgggCgGUGGGUUcGgUGGCUCGGaCGa -3' miRNA: 3'- -CCGUa--G-CACCCGGcUgACCGAGCC-GC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 2578 | 0.66 | 0.388433 |
Target: 5'- uGC-UCG-GGGCCGA--GGCUgaCGGCGa -3' miRNA: 3'- cCGuAGCaCCCGGCUgaCCGA--GCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 48876 | 0.66 | 0.384966 |
Target: 5'- aGCAuUCGccGGCCGACgUGGCggcgaggugcgggCGGCGa -3' miRNA: 3'- cCGU-AGCacCCGGCUG-ACCGa------------GCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 29947 | 0.67 | 0.371302 |
Target: 5'- cGGCucgacGUCG-GGGCCGuCgGGCUCGuCGu -3' miRNA: 3'- -CCG-----UAGCaCCCGGCuGaCCGAGCcGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 4447 | 0.67 | 0.362932 |
Target: 5'- aGGUcgUGUGGaggcuCCGGCgggGGCcCGGCGg -3' miRNA: 3'- -CCGuaGCACCc----GGCUGa--CCGaGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 15922 | 0.68 | 0.315504 |
Target: 5'- cGguUCGggGGGCCGGCUcuGCUCGuGUGa -3' miRNA: 3'- cCguAGCa-CCCGGCUGAc-CGAGC-CGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 34935 | 0.68 | 0.314754 |
Target: 5'- cGGCggCGaGGGCCuGCUcGGCggacaccUCGGCGg -3' miRNA: 3'- -CCGuaGCaCCCGGcUGA-CCG-------AGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 35225 | 0.68 | 0.30077 |
Target: 5'- aGGCGgcCGUGGG-CGGCUGGUagucgucgaUgGGCGg -3' miRNA: 3'- -CCGUa-GCACCCgGCUGACCG---------AgCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 33005 | 0.69 | 0.266274 |
Target: 5'- gGGUggCGgGGGCguCGACgaucgGGCUCGGCc -3' miRNA: 3'- -CCGuaGCaCCCG--GCUGa----CCGAGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 36338 | 0.69 | 0.259771 |
Target: 5'- aGGCGaacCGgcGGGCCGAgcGGCUCgGGCGg -3' miRNA: 3'- -CCGUa--GCa-CCCGGCUgaCCGAG-CCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 37728 | 0.7 | 0.217832 |
Target: 5'- uGCggCGcGGcGCCGGCUGG-UCGGCGu -3' miRNA: 3'- cCGuaGCaCC-CGGCUGACCgAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 37656 | 0.71 | 0.211793 |
Target: 5'- cGGCGUCGgugcGGGCCGcCUGcGCggcccugaugucgUCGGCc -3' miRNA: 3'- -CCGUAGCa---CCCGGCuGAC-CG-------------AGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 32056 | 0.71 | 0.186621 |
Target: 5'- cGGguUCGaguucGGGCuCGACcucgGGCUCGGCc -3' miRNA: 3'- -CCguAGCa----CCCG-GCUGa---CCGAGCCGc -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 27185 | 0.71 | 0.186621 |
Target: 5'- gGGCAUCGgcgcGGGCCGugaucggcaGC-GGgUCGGCGc -3' miRNA: 3'- -CCGUAGCa---CCCGGC---------UGaCCgAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 19113 | 0.72 | 0.181819 |
Target: 5'- cGGCccacgCGUGGgcGCCGAUccGCUCGGCGa -3' miRNA: 3'- -CCGua---GCACC--CGGCUGacCGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 40765 | 0.72 | 0.177127 |
Target: 5'- cGGC-UCGUcGGGCCGGucGGC-CGGCGc -3' miRNA: 3'- -CCGuAGCA-CCCGGCUgaCCGaGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 38380 | 0.76 | 0.08311 |
Target: 5'- cGGCugucUCGacGGCCGGCaggGGCUCGGCGu -3' miRNA: 3'- -CCGu---AGCacCCGGCUGa--CCGAGCCGC- -5' |
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26427 | 5' | -60.8 | NC_005345.2 | + | 38593 | 0.66 | 0.437193 |
Target: 5'- cGGCAUCGUGGcGagcgccucggacaCGGCgaucucgacgucGGcCUCGGCGa -3' miRNA: 3'- -CCGUAGCACC-Cg------------GCUGa-----------CC-GAGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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