miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26427 5' -60.8 NC_005345.2 + 38593 0.66 0.437193
Target:  5'- cGGCAUCGUGGcGagcgccucggacaCGGCgaucucgacgucGGcCUCGGCGa -3'
miRNA:   3'- -CCGUAGCACC-Cg------------GCUGa-----------CC-GAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 38380 0.76 0.08311
Target:  5'- cGGCugucUCGacGGCCGGCaggGGCUCGGCGu -3'
miRNA:   3'- -CCGu---AGCacCCGGCUGa--CCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 40765 0.72 0.177127
Target:  5'- cGGC-UCGUcGGGCCGGucGGC-CGGCGc -3'
miRNA:   3'- -CCGuAGCA-CCCGGCUgaCCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 19113 0.72 0.181819
Target:  5'- cGGCccacgCGUGGgcGCCGAUccGCUCGGCGa -3'
miRNA:   3'- -CCGua---GCACC--CGGCUGacCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 27185 0.71 0.186621
Target:  5'- gGGCAUCGgcgcGGGCCGugaucggcaGC-GGgUCGGCGc -3'
miRNA:   3'- -CCGUAGCa---CCCGGC---------UGaCCgAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 32056 0.71 0.186621
Target:  5'- cGGguUCGaguucGGGCuCGACcucgGGCUCGGCc -3'
miRNA:   3'- -CCguAGCa----CCCG-GCUGa---CCGAGCCGc -5'
26427 5' -60.8 NC_005345.2 + 37656 0.71 0.211793
Target:  5'- cGGCGUCGgugcGGGCCGcCUGcGCggcccugaugucgUCGGCc -3'
miRNA:   3'- -CCGUAGCa---CCCGGCuGAC-CG-------------AGCCGc -5'
26427 5' -60.8 NC_005345.2 + 37728 0.7 0.217832
Target:  5'- uGCggCGcGGcGCCGGCUGG-UCGGCGu -3'
miRNA:   3'- cCGuaGCaCC-CGGCUGACCgAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 36338 0.69 0.259771
Target:  5'- aGGCGaacCGgcGGGCCGAgcGGCUCgGGCGg -3'
miRNA:   3'- -CCGUa--GCa-CCCGGCUgaCCGAG-CCGC- -5'
26427 5' -60.8 NC_005345.2 + 33005 0.69 0.266274
Target:  5'- gGGUggCGgGGGCguCGACgaucgGGCUCGGCc -3'
miRNA:   3'- -CCGuaGCaCCCG--GCUGa----CCGAGCCGc -5'
26427 5' -60.8 NC_005345.2 + 35225 0.68 0.30077
Target:  5'- aGGCGgcCGUGGG-CGGCUGGUagucgucgaUgGGCGg -3'
miRNA:   3'- -CCGUa-GCACCCgGCUGACCG---------AgCCGC- -5'
26427 5' -60.8 NC_005345.2 + 35771 0.66 0.397191
Target:  5'- gGGCGgggCgGUGGGUUcGgUGGCUCGGaCGa -3'
miRNA:   3'- -CCGUa--G-CACCCGGcUgACCGAGCC-GC- -5'
26427 5' -60.8 NC_005345.2 + 2578 0.66 0.388433
Target:  5'- uGC-UCG-GGGCCGA--GGCUgaCGGCGa -3'
miRNA:   3'- cCGuAGCaCCCGGCUgaCCGA--GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 48876 0.66 0.384966
Target:  5'- aGCAuUCGccGGCCGACgUGGCggcgaggugcgggCGGCGa -3'
miRNA:   3'- cCGU-AGCacCCGGCUG-ACCGa------------GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 29947 0.67 0.371302
Target:  5'- cGGCucgacGUCG-GGGCCGuCgGGCUCGuCGu -3'
miRNA:   3'- -CCG-----UAGCaCCCGGCuGaCCGAGCcGC- -5'
26427 5' -60.8 NC_005345.2 + 4447 0.67 0.362932
Target:  5'- aGGUcgUGUGGaggcuCCGGCgggGGCcCGGCGg -3'
miRNA:   3'- -CCGuaGCACCc----GGCUGa--CCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 15922 0.68 0.315504
Target:  5'- cGguUCGggGGGCCGGCUcuGCUCGuGUGa -3'
miRNA:   3'- cCguAGCa-CCCGGCUGAc-CGAGC-CGC- -5'
26427 5' -60.8 NC_005345.2 + 34935 0.68 0.314754
Target:  5'- cGGCggCGaGGGCCuGCUcGGCggacaccUCGGCGg -3'
miRNA:   3'- -CCGuaGCaCCCGGcUGA-CCG-------AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 7026 0.66 0.433461
Target:  5'- cGgGUCGccGGUCGACcGGC-CGGCGa -3'
miRNA:   3'- cCgUAGCacCCGGCUGaCCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 30040 0.74 0.118375
Target:  5'- cGGCGcccacgCGUGGGCCGACgacaccgacGGCgagcucaUCGGCGa -3'
miRNA:   3'- -CCGUa-----GCACCCGGCUGa--------CCG-------AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.