miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 3' -56.2 NC_005345.2 + 2624 0.66 0.606968
Target:  5'- -aGCGCGAUggaGCGGCgcGGACUgaccGGGUc-- -3'
miRNA:   3'- caCGCGCUG---UGCCG--UCUGA----CCCAuua -5'
26428 3' -56.2 NC_005345.2 + 34411 0.66 0.606968
Target:  5'- gGUGgGCGGCGCcGCGGACcggaUGGGcGAc -3'
miRNA:   3'- -CACgCGCUGUGcCGUCUG----ACCCaUUa -5'
26428 3' -56.2 NC_005345.2 + 2050 0.66 0.595813
Target:  5'- -gGCGCGGCcCGGCGGGCcGcGGcGAa -3'
miRNA:   3'- caCGCGCUGuGCCGUCUGaC-CCaUUa -5'
26428 3' -56.2 NC_005345.2 + 2764 0.66 0.584689
Target:  5'- -aGCGCGccacGCGCGGCGGcCUcGGUAc- -3'
miRNA:   3'- caCGCGC----UGUGCCGUCuGAcCCAUua -5'
26428 3' -56.2 NC_005345.2 + 37725 0.67 0.540691
Target:  5'- -cGCuGCGGCGCGGCGccGGCUGGu---- -3'
miRNA:   3'- caCG-CGCUGUGCCGU--CUGACCcauua -5'
26428 3' -56.2 NC_005345.2 + 14570 0.67 0.529856
Target:  5'- -cGCGUccGACACGGCGGACagugcGGGc--- -3'
miRNA:   3'- caCGCG--CUGUGCCGUCUGa----CCCauua -5'
26428 3' -56.2 NC_005345.2 + 38224 0.67 0.529856
Target:  5'- -aGCGgGACGCuaCGGGCUGGGUu-- -3'
miRNA:   3'- caCGCgCUGUGccGUCUGACCCAuua -5'
26428 3' -56.2 NC_005345.2 + 31182 0.67 0.508434
Target:  5'- gGUGCGUacucgGGCGCGGCGGguGCggcGGGUGc- -3'
miRNA:   3'- -CACGCG-----CUGUGCCGUC--UGa--CCCAUua -5'
26428 3' -56.2 NC_005345.2 + 26866 0.68 0.477017
Target:  5'- cGUGCcCGACAgCGGCGGugcggucgaUGGGUGAg -3'
miRNA:   3'- -CACGcGCUGU-GCCGUCug-------ACCCAUUa -5'
26428 3' -56.2 NC_005345.2 + 21387 0.69 0.433745
Target:  5'- gGUGCGCGGgugacggggcagagUGCGuGCAGGCaUGGGUGu- -3'
miRNA:   3'- -CACGCGCU--------------GUGC-CGUCUG-ACCCAUua -5'
26428 3' -56.2 NC_005345.2 + 41281 0.69 0.433745
Target:  5'- -gGCGUccCACGGCAGGCUguacaccugcgcgaGGGUGAUc -3'
miRNA:   3'- caCGCGcuGUGCCGUCUGA--------------CCCAUUA- -5'
26428 3' -56.2 NC_005345.2 + 28401 0.69 0.426918
Target:  5'- -cGCgGCGGCAgCGGCAGGCaGGGcgGAUc -3'
miRNA:   3'- caCG-CGCUGU-GCCGUCUGaCCCa-UUA- -5'
26428 3' -56.2 NC_005345.2 + 15353 0.69 0.425948
Target:  5'- gGUGUGCGGCgaaguaggcggcgACGGCAGcGCggGGGUAc- -3'
miRNA:   3'- -CACGCGCUG-------------UGCCGUC-UGa-CCCAUua -5'
26428 3' -56.2 NC_005345.2 + 14797 0.69 0.417277
Target:  5'- gGUGCGCuucGACgucgaGCGGCGGGCgcGGGUGu- -3'
miRNA:   3'- -CACGCG---CUG-----UGCCGUCUGa-CCCAUua -5'
26428 3' -56.2 NC_005345.2 + 4164 0.69 0.389166
Target:  5'- -gGUGuCGACGCGGCAGGCgcucacGGGgcGg -3'
miRNA:   3'- caCGC-GCUGUGCCGUCUGa-----CCCauUa -5'
26428 3' -56.2 NC_005345.2 + 26948 0.7 0.362326
Target:  5'- cUGCGCGAC-CGGCuGAUcGGGUu-- -3'
miRNA:   3'- cACGCGCUGuGCCGuCUGaCCCAuua -5'
26428 3' -56.2 NC_005345.2 + 5266 0.71 0.328586
Target:  5'- -cGgGCGGCAgGGCGGGCUcGGGg--- -3'
miRNA:   3'- caCgCGCUGUgCCGUCUGA-CCCauua -5'
26428 3' -56.2 NC_005345.2 + 23608 0.75 0.174636
Target:  5'- -gGCGCGACGcCGGCGGACcGGGc--- -3'
miRNA:   3'- caCGCGCUGU-GCCGUCUGaCCCauua -5'
26428 3' -56.2 NC_005345.2 + 4200 0.76 0.143681
Target:  5'- cGUGCagGCGGCGCGGCAGauGCUGcGGUAc- -3'
miRNA:   3'- -CACG--CGCUGUGCCGUC--UGAC-CCAUua -5'
26428 3' -56.2 NC_005345.2 + 45579 1.05 0.001192
Target:  5'- gGUGCGCGACACGGCAGACUGGGUAAUc -3'
miRNA:   3'- -CACGCGCUGUGCCGUCUGACCCAUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.