miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 5' -53.9 NC_005345.2 + 28345 0.66 0.775635
Target:  5'- aGCGCGACacg--CGcCGUCGgCGCCGa -3'
miRNA:   3'- -CGUGCUGgacuaGCuGUAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 18313 0.66 0.775635
Target:  5'- cGC-CGucGCaCUGGUCGGCGUCaccggCGCCGu -3'
miRNA:   3'- -CGuGC--UG-GACUAGCUGUAGca---GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 27618 0.66 0.775635
Target:  5'- aGCACGGCgaGAUCGGuccgcugcUcgCGgucCGCCGa -3'
miRNA:   3'- -CGUGCUGgaCUAGCU--------GuaGCa--GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 6416 0.66 0.775635
Target:  5'- cGCGgGcccGCCgucGGUCGGCgaGUgGUCGCCGa -3'
miRNA:   3'- -CGUgC---UGGa--CUAGCUG--UAgCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 37622 0.66 0.772613
Target:  5'- -gGCGACCgaGAgcugaacgcguacgUCGAgacCGUCGUCGUCGa -3'
miRNA:   3'- cgUGCUGGa-CU--------------AGCU---GUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 34632 0.66 0.765511
Target:  5'- aGUACGggGCgUGGcugcugccgcUCGGCGUCGcggUCGCCGg -3'
miRNA:   3'- -CGUGC--UGgACU----------AGCUGUAGC---AGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 16608 0.66 0.765511
Target:  5'- gGCcCGACCcccUCGGCGUCGgcaugcaCGCCGu -3'
miRNA:   3'- -CGuGCUGGacuAGCUGUAGCa------GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 9301 0.66 0.765511
Target:  5'- uCGCGGCCggcGUUGAguUCGUCGgCGa -3'
miRNA:   3'- cGUGCUGGac-UAGCUguAGCAGCgGC- -5'
26428 5' -53.9 NC_005345.2 + 24504 0.66 0.765511
Target:  5'- cGCGgGAuCCUGGUCGACcaccgCGaggCGCCc -3'
miRNA:   3'- -CGUgCU-GGACUAGCUGua---GCa--GCGGc -5'
26428 5' -53.9 NC_005345.2 + 18996 0.66 0.764491
Target:  5'- aGCcuCGGCCcGAgcggggcggcgccUCGACGUCGcCGCCc -3'
miRNA:   3'- -CGu-GCUGGaCU-------------AGCUGUAGCaGCGGc -5'
26428 5' -53.9 NC_005345.2 + 22125 0.67 0.75525
Target:  5'- aGCACaGACUc-GUCGACGUgGUCGCg- -3'
miRNA:   3'- -CGUG-CUGGacUAGCUGUAgCAGCGgc -5'
26428 5' -53.9 NC_005345.2 + 45165 0.67 0.75525
Target:  5'- cGUcCGACCgGGccUCGACGUCG-CaGCCGa -3'
miRNA:   3'- -CGuGCUGGaCU--AGCUGUAGCaG-CGGC- -5'
26428 5' -53.9 NC_005345.2 + 28154 0.67 0.75525
Target:  5'- aCGCGucGCCcGGUCGGCGUuCcUCGCCGc -3'
miRNA:   3'- cGUGC--UGGaCUAGCUGUA-GcAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 8970 0.67 0.75525
Target:  5'- cGC-CGGCCUcGAUCG-CAgcugCG-CGCCGu -3'
miRNA:   3'- -CGuGCUGGA-CUAGCuGUa---GCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 14663 0.67 0.744863
Target:  5'- gGCAcCGGCCgGG-CGGCGUCGccgaUGCCGg -3'
miRNA:   3'- -CGU-GCUGGaCUaGCUGUAGCa---GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 20603 0.67 0.744863
Target:  5'- uGCGCGgaGCC-GAgccaCGACugAUCGUCGCCc -3'
miRNA:   3'- -CGUGC--UGGaCUa---GCUG--UAGCAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 25077 0.67 0.744863
Target:  5'- cCACGGCCggccGAUCGGC----UCGCCGu -3'
miRNA:   3'- cGUGCUGGa---CUAGCUGuagcAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 3892 0.67 0.744863
Target:  5'- aGCGCGGCgaGGgcggggCgGACGUCGUCGUa- -3'
miRNA:   3'- -CGUGCUGgaCUa-----G-CUGUAGCAGCGgc -5'
26428 5' -53.9 NC_005345.2 + 30128 0.67 0.744863
Target:  5'- -gACGGCUcGGgcggCGACGUCGaggCGCCGc -3'
miRNA:   3'- cgUGCUGGaCUa---GCUGUAGCa--GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 14409 0.67 0.734361
Target:  5'- uGCACGucgccgacgccuGCCgggcGAUCGAgGUCGcgcucugcucgcUCGCCGa -3'
miRNA:   3'- -CGUGC------------UGGa---CUAGCUgUAGC------------AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.