miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26429 3' -59.2 NC_005345.2 + 32726 0.66 0.530725
Target:  5'- gCCGAGUcCcUCGGCgUGGGCccGCUUGCUc -3'
miRNA:   3'- -GGCUCGuGcAGCUG-GCCCG--UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 38211 0.66 0.530725
Target:  5'- aCCGAGU-CGaUCGAgCGGGaCGCUacgggcuggguUGCCg -3'
miRNA:   3'- -GGCUCGuGC-AGCUgGCCC-GUGA-----------GCGG- -5'
26429 3' -59.2 NC_005345.2 + 27055 0.66 0.529702
Target:  5'- aCCGAGC-CGcCGACCGucaacggaaccuuGcGCGCggugUGCCg -3'
miRNA:   3'- -GGCUCGuGCaGCUGGC-------------C-CGUGa---GCGG- -5'
26429 3' -59.2 NC_005345.2 + 3747 0.66 0.529702
Target:  5'- gUCGAagaacucGCGCGUgGGCUuGGCacacccccACUCGCCg -3'
miRNA:   3'- -GGCU-------CGUGCAgCUGGcCCG--------UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 7141 0.66 0.527659
Target:  5'- gCgGGGCACGUgGcCCGGgacgggucggacccGCugUCGCa -3'
miRNA:   3'- -GgCUCGUGCAgCuGGCC--------------CGugAGCGg -5'
26429 3' -59.2 NC_005345.2 + 47136 0.66 0.520532
Target:  5'- cCCgGAGCAgCGgagCGAggGGGCGCUgugagCGCCg -3'
miRNA:   3'- -GG-CUCGU-GCa--GCUggCCCGUGA-----GCGG- -5'
26429 3' -59.2 NC_005345.2 + 15327 0.66 0.520532
Target:  5'- gUCG-GUGCGUCGGCCGGG-GCguaGCg -3'
miRNA:   3'- -GGCuCGUGCAGCUGGCCCgUGag-CGg -5'
26429 3' -59.2 NC_005345.2 + 39536 0.66 0.520532
Target:  5'- aUCGAGCAgGUCGugcACCGGcccCGCg-GCCg -3'
miRNA:   3'- -GGCUCGUgCAGC---UGGCCc--GUGagCGG- -5'
26429 3' -59.2 NC_005345.2 + 45090 0.66 0.520532
Target:  5'- aCCGAgGCAUacCGugUcGGCGCUCGUCg -3'
miRNA:   3'- -GGCU-CGUGcaGCugGcCCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 37555 0.66 0.520532
Target:  5'- gCCG-GCACcUCGGCCcgaggcGGGCGCagGCg -3'
miRNA:   3'- -GGCuCGUGcAGCUGG------CCCGUGagCGg -5'
26429 3' -59.2 NC_005345.2 + 46776 0.66 0.520532
Target:  5'- aCG-GCGCG-CGACgGGGagguCACgCGCCg -3'
miRNA:   3'- gGCuCGUGCaGCUGgCCC----GUGaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 3879 0.66 0.520532
Target:  5'- gCCGAGUgccugcagcgcgGCGagGGCgGGGCGgaCGUCg -3'
miRNA:   3'- -GGCUCG------------UGCagCUGgCCCGUgaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 1174 0.66 0.520532
Target:  5'- gCGuGCGCGgCGcACaCGGGCGgCUCGgCa -3'
miRNA:   3'- gGCuCGUGCaGC-UG-GCCCGU-GAGCgG- -5'
26429 3' -59.2 NC_005345.2 + 7784 0.66 0.520532
Target:  5'- aUGAGUcCGUUG-CCGaGCGCUgCGCCg -3'
miRNA:   3'- gGCUCGuGCAGCuGGCcCGUGA-GCGG- -5'
26429 3' -59.2 NC_005345.2 + 4748 0.66 0.510417
Target:  5'- aCCGGGCuCGacUCgGACCucgacGGCACccUCGCCg -3'
miRNA:   3'- -GGCUCGuGC--AG-CUGGc----CCGUG--AGCGG- -5'
26429 3' -59.2 NC_005345.2 + 38515 0.66 0.510417
Target:  5'- cCUGAGuCACGcgugcugcUCGAcCCGGGCcgaccgGCcgCGCCg -3'
miRNA:   3'- -GGCUC-GUGC--------AGCU-GGCCCG------UGa-GCGG- -5'
26429 3' -59.2 NC_005345.2 + 14621 0.66 0.510417
Target:  5'- cCCGAccuuCGCGagGACCGGGagcacCUCGCg -3'
miRNA:   3'- -GGCUc---GUGCagCUGGCCCgu---GAGCGg -5'
26429 3' -59.2 NC_005345.2 + 18992 0.66 0.510417
Target:  5'- cCCGAGC-C-UCGGCCcgagcgGGGCGg-CGCCu -3'
miRNA:   3'- -GGCUCGuGcAGCUGG------CCCGUgaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 19771 0.66 0.50941
Target:  5'- gCCGAGC-CGUaCGacaccgaGCCGuGGCucgGCUaCGCCg -3'
miRNA:   3'- -GGCUCGuGCA-GC-------UGGC-CCG---UGA-GCGG- -5'
26429 3' -59.2 NC_005345.2 + 30800 0.66 0.50941
Target:  5'- aCCGA-CugGUCGAccucgacCCGGGCcgACgUCGCg -3'
miRNA:   3'- -GGCUcGugCAGCU-------GGCCCG--UG-AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.