miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26429 5' -56.7 NC_005345.2 + 5970 0.67 0.56563
Target:  5'- -gGGAAACCaCCCCGCcUCGucucCCAGu -3'
miRNA:   3'- caCCUUUGG-GGGGUGcAGCuac-GGUC- -5'
26429 5' -56.7 NC_005345.2 + 21068 0.67 0.56563
Target:  5'- -cGGAcggcACCCUCCGgGUCGAgaucacaGCCGGc -3'
miRNA:   3'- caCCUu---UGGGGGGUgCAGCUa------CGGUC- -5'
26429 5' -56.7 NC_005345.2 + 26616 0.67 0.544079
Target:  5'- aUGGcuguACCUCCCGUGUCGGgcgcccgGCCGGg -3'
miRNA:   3'- cACCuu--UGGGGGGUGCAGCUa------CGGUC- -5'
26429 5' -56.7 NC_005345.2 + 18968 0.67 0.512286
Target:  5'- -aGGAAcgaGCgCCaCGCGUCGAUGCCc- -3'
miRNA:   3'- caCCUU---UGgGGgGUGCAGCUACGGuc -5'
26429 5' -56.7 NC_005345.2 + 16605 0.68 0.491521
Target:  5'- cGUGGcccGACCCCCUcgGCGUCGGcaUGCa-- -3'
miRNA:   3'- -CACCu--UUGGGGGG--UGCAGCU--ACGguc -5'
26429 5' -56.7 NC_005345.2 + 37573 0.69 0.441433
Target:  5'- -cGcGAGGCgCCCguCGUCGAgcUGCCGGg -3'
miRNA:   3'- caC-CUUUGgGGGguGCAGCU--ACGGUC- -5'
26429 5' -56.7 NC_005345.2 + 36403 0.69 0.412805
Target:  5'- uGUGGGAcCCCCUCGCGaacaucuacgccUCGAUGCg-- -3'
miRNA:   3'- -CACCUUuGGGGGGUGC------------AGCUACGguc -5'
26429 5' -56.7 NC_005345.2 + 15276 0.72 0.273985
Target:  5'- -cGGcg-UCCCCCACGUCGAcGCCGa -3'
miRNA:   3'- caCCuuuGGGGGGUGCAGCUaCGGUc -5'
26429 5' -56.7 NC_005345.2 + 4069 0.73 0.26036
Target:  5'- aUGGAAAUCgCCUGCGUCGA-GCCGa -3'
miRNA:   3'- cACCUUUGGgGGGUGCAGCUaCGGUc -5'
26429 5' -56.7 NC_005345.2 + 16086 0.73 0.251155
Target:  5'- aUGGAcACCCCCaccuacgagcccaACGUCGA-GCCGGa -3'
miRNA:   3'- cACCUuUGGGGGg------------UGCAGCUaCGGUC- -5'
26429 5' -56.7 NC_005345.2 + 42670 0.77 0.136803
Target:  5'- cUGGAGGCCUCCCGugccugaccUGUgGAUGCCGGg -3'
miRNA:   3'- cACCUUUGGGGGGU---------GCAgCUACGGUC- -5'
26429 5' -56.7 NC_005345.2 + 46625 1.08 0.000761
Target:  5'- cGUGGAAACCCCCCACGUCGAUGCCAGc -3'
miRNA:   3'- -CACCUUUGGGGGGUGCAGCUACGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.