miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2643 3' -61.6 NC_001491.2 + 100566 0.78 0.13737
Target:  5'- cCGCcCCCAucCGCCGgCCUgCCCGCUCc -3'
miRNA:   3'- -GCGuGGGUuuGCGGCgGGA-GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 103102 0.66 0.649507
Target:  5'- gCGCGCCCAAauauaggacucaaGCGCa-CCUUCCCacCUCg -3'
miRNA:   3'- -GCGUGGGUU-------------UGCGgcGGGAGGGc-GAG- -5'
2643 3' -61.6 NC_001491.2 + 110418 0.67 0.6011
Target:  5'- aCG-AUCgCAAACGCCggGCCCacUCCCGCUa -3'
miRNA:   3'- -GCgUGG-GUUUGCGG--CGGG--AGGGCGAg -5'
2643 3' -61.6 NC_001491.2 + 112350 0.68 0.55223
Target:  5'- gGCACCCAcg-GCuUGUCCgggCCUGCUCg -3'
miRNA:   3'- gCGUGGGUuugCG-GCGGGa--GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 118283 1.08 0.001023
Target:  5'- cCGCACCCAAACGCCGCCCUCCCGCUCc -3'
miRNA:   3'- -GCGUGGGUUUGCGGCGGGAGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 118938 0.7 0.40705
Target:  5'- aCGCugCCu--CcCCGCCCgUCUCGCUCc -3'
miRNA:   3'- -GCGugGGuuuGcGGCGGG-AGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 123493 0.68 0.542586
Target:  5'- uGCGCUCGacaGACGCCcugaCCCUCCguagcUGCUCa -3'
miRNA:   3'- gCGUGGGU---UUGCGGc---GGGAGG-----GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 124822 0.68 0.561924
Target:  5'- -uCACCCAGACGgUGUUCUCCgCGCg- -3'
miRNA:   3'- gcGUGGGUUUGCgGCGGGAGG-GCGag -5'
2643 3' -61.6 NC_001491.2 + 126885 0.66 0.660362
Target:  5'- gGUACggcGugGCCGCuccCCUCUCGCUCg -3'
miRNA:   3'- gCGUGgguUugCGGCG---GGAGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 136994 0.67 0.620841
Target:  5'- gGUGCCgcUAAACGCgagGCCCUUaCCGCUCu -3'
miRNA:   3'- gCGUGG--GUUUGCGg--CGGGAG-GGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 143671 0.71 0.351445
Target:  5'- aGCACa---GCGCCGCCCUggCGCUCa -3'
miRNA:   3'- gCGUGgguuUGCGGCGGGAggGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 146226 0.67 0.591258
Target:  5'- aGCGCCCcguuuAGCGCCGCCa-CCCaGUa- -3'
miRNA:   3'- gCGUGGGu----UUGCGGCGGgaGGG-CGag -5'
2643 3' -61.6 NC_001491.2 + 147475 0.73 0.288209
Target:  5'- aCGCcCCCAuACcCCGCCCcCUCGCUCc -3'
miRNA:   3'- -GCGuGGGUuUGcGGCGGGaGGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.