Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 52773 | 0.69 | 0.476921 |
Target: 5'- gCGCGCUUAAGCGCCGCCgUUaugccaCCGUa- -3' miRNA: 3'- -GCGUGGGUUUGCGGCGGgAG------GGCGag -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 51484 | 0.66 | 0.670208 |
Target: 5'- aCGUGUCCGAGgGCCGCCUUCUgagcggCGCUUc -3' miRNA: 3'- -GCGUGGGUUUgCGGCGGGAGG------GCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 46061 | 0.69 | 0.449991 |
Target: 5'- uGCGCCUguACGCCucccggaCCCUCCC-CUCg -3' miRNA: 3'- gCGUGGGuuUGCGGc------GGGAGGGcGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 42796 | 0.68 | 0.523474 |
Target: 5'- uGCugUgGGGCGCCcacGCCCagaagUCCUGCUCc -3' miRNA: 3'- gCGugGgUUUGCGG---CGGG-----AGGGCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 40829 | 0.67 | 0.591258 |
Target: 5'- aGCcCCCcuuGGACGaCUGCCC-CCCGCg- -3' miRNA: 3'- gCGuGGG---UUUGC-GGCGGGaGGGCGag -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 39059 | 0.69 | 0.476921 |
Target: 5'- aGCGCCaggcugagaAGACGCCaGCCCagaaccaacUCCCGCa- -3' miRNA: 3'- gCGUGGg--------UUUGCGG-CGGG---------AGGGCGag -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 36131 | 0.66 | 0.650495 |
Target: 5'- aGCACaacgCAGACuCCGCCuagaCUCCCGcCUCc -3' miRNA: 3'- gCGUGg---GUUUGcGGCGG----GAGGGC-GAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 35960 | 0.68 | 0.523474 |
Target: 5'- aGC-CCCGgcGugGCCcagGCCCUCCgccgCGCUCc -3' miRNA: 3'- gCGuGGGU--UugCGG---CGGGAGG----GCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 34256 | 0.66 | 0.650495 |
Target: 5'- aGCACCa----GCCGCagaaggCCCGCUCc -3' miRNA: 3'- gCGUGGguuugCGGCGgga---GGGCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 33547 | 0.7 | 0.430785 |
Target: 5'- gGCGCCCAGGcCGuCCGCCUUCagacucagggaGCUCg -3' miRNA: 3'- gCGUGGGUUU-GC-GGCGGGAGgg---------CGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 33392 | 0.67 | 0.620841 |
Target: 5'- gGCuACCCGGcccAgGCCGCCgCUgCCGCg- -3' miRNA: 3'- gCG-UGGGUU---UgCGGCGG-GAgGGCGag -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 32441 | 0.68 | 0.558041 |
Target: 5'- gGCGCCCGcucccaGCCGCCCgggaggaggccuccUCCCuccggggGCUCg -3' miRNA: 3'- gCGUGGGUuug---CGGCGGG--------------AGGG-------CGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 32388 | 0.69 | 0.467854 |
Target: 5'- aGCugCCGcuccGGCGCCGCuucccCCggcgcaCCCGCUCc -3' miRNA: 3'- gCGugGGU----UUGCGGCG-----GGa-----GGGCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 32290 | 0.66 | 0.657404 |
Target: 5'- gGCACUCGcagAACGCCGCgaaaaccccgucggCCgCCgGCUCu -3' miRNA: 3'- gCGUGGGU---UUGCGGCG--------------GGaGGgCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 31474 | 0.66 | 0.659376 |
Target: 5'- gGCGCCCGucguccgAGCGcCCGCCgCggaacCCCGC-Ca -3' miRNA: 3'- gCGUGGGU-------UUGC-GGCGG-Ga----GGGCGaG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 28172 | 0.7 | 0.398774 |
Target: 5'- gGCuaaacuCCgAAACGCUGCUCUCcCCGCUg -3' miRNA: 3'- gCGu-----GGgUUUGCGGCGGGAG-GGCGAg -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 27367 | 0.68 | 0.532999 |
Target: 5'- gCGCACUgAuugcGCGCgGCCCUCCgcgaGCUg -3' miRNA: 3'- -GCGUGGgUu---UGCGgCGGGAGGg---CGAg -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 27243 | 0.7 | 0.398774 |
Target: 5'- cCGCGCCCGccccCGUC-CCCgucCCCGCUCc -3' miRNA: 3'- -GCGUGGGUuu--GCGGcGGGa--GGGCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 27088 | 0.67 | 0.620841 |
Target: 5'- gCGCGgCCAGGCcuccgcggGCgGCCCggCgCCGCUCc -3' miRNA: 3'- -GCGUgGGUUUG--------CGgCGGGa-G-GGCGAG- -5' |
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2643 | 3' | -61.6 | NC_001491.2 | + | 26765 | 0.67 | 0.620841 |
Target: 5'- gGCGCCCGccauguugaguAGCGCgGCCCagUagCGCUCu -3' miRNA: 3'- gCGUGGGU-----------UUGCGgCGGGagG--GCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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