Results 41 - 53 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 24717 | 0.66 | 0.640614 |
Target: 5'- cCGcCGCCgcGACGCCGCCCcgccccggggaCCCGCg- -3' miRNA: 3'- -GC-GUGGguUUGCGGCGGGa----------GGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 146226 | 0.67 | 0.591258 |
Target: 5'- aGCGCCCcguuuAGCGCCGCCa-CCCaGUa- -3' miRNA: 3'- gCGUGGGu----UUGCGGCGGgaGGG-CGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 2852 | 0.67 | 0.6011 |
Target: 5'- gGgGCUCgGAGCGCCGCUUg-CCGCUCu -3' miRNA: 3'- gCgUGGG-UUUGCGGCGGGagGGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 110418 | 0.67 | 0.6011 |
Target: 5'- aCG-AUCgCAAACGCCggGCCCacUCCCGCUa -3' miRNA: 3'- -GCgUGG-GUUUGCGG--CGGG--AGGGCGAg -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 2455 | 0.67 | 0.610963 |
Target: 5'- aGCucCCCgAAGCGCgCGCCgUCCCGggCc -3' miRNA: 3'- gCGu-GGG-UUUGCG-GCGGgAGGGCgaG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 76238 | 0.67 | 0.614913 |
Target: 5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGCa- -3' miRNA: 3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 1570 | 0.67 | 0.620841 |
Target: 5'- gGC-CCC-AGCGCCGCgCCggCCGCa- -3' miRNA: 3'- gCGuGGGuUUGCGGCG-GGagGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 26765 | 0.67 | 0.620841 |
Target: 5'- gGCGCCCGccauguugaguAGCGCgGCCCagUagCGCUCu -3' miRNA: 3'- gCGUGGGU-----------UUGCGgCGGGagG--GCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 27088 | 0.67 | 0.620841 |
Target: 5'- gCGCGgCCAGGCcuccgcggGCgGCCCggCgCCGCUCc -3' miRNA: 3'- -GCGUgGGUUUG--------CGgCGGGa-G-GGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 33392 | 0.67 | 0.620841 |
Target: 5'- gGCuACCCGGcccAgGCCGCCgCUgCCGCg- -3' miRNA: 3'- gCG-UGGGUU---UgCGGCGG-GAgGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 136994 | 0.67 | 0.620841 |
Target: 5'- gGUGCCgcUAAACGCgagGCCCUUaCCGCUCu -3' miRNA: 3'- gCGUGG--GUUUGCGg--CGGGAG-GGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 26002 | 0.66 | 0.630727 |
Target: 5'- -uCAuCCCAGGCGgcguuuccccuaCCGCUCUccCCCGCUCg -3' miRNA: 3'- gcGU-GGGUUUGC------------GGCGGGA--GGGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 76174 | 0.66 | 0.683942 |
Target: 5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3' miRNA: 3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home