Results 21 - 40 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 76238 | 0.67 | 0.614913 |
Target: 5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGCa- -3' miRNA: 3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 2455 | 0.67 | 0.610963 |
Target: 5'- aGCucCCCgAAGCGCgCGCCgUCCCGggCc -3' miRNA: 3'- gCGu-GGG-UUUGCG-GCGGgAGGGCgaG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 110418 | 0.67 | 0.6011 |
Target: 5'- aCG-AUCgCAAACGCCggGCCCacUCCCGCUa -3' miRNA: 3'- -GCgUGG-GUUUGCGG--CGGG--AGGGCGAg -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 2852 | 0.67 | 0.6011 |
Target: 5'- gGgGCUCgGAGCGCCGCUUg-CCGCUCu -3' miRNA: 3'- gCgUGGG-UUUGCGGCGGGagGGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 146226 | 0.67 | 0.591258 |
Target: 5'- aGCGCCCcguuuAGCGCCGCCa-CCCaGUa- -3' miRNA: 3'- gCGUGGGu----UUGCGGCGGgaGGG-CGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 40829 | 0.67 | 0.591258 |
Target: 5'- aGCcCCCcuuGGACGaCUGCCC-CCCGCg- -3' miRNA: 3'- gCGuGGG---UUUGC-GGCGGGaGGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 89396 | 0.67 | 0.580465 |
Target: 5'- uGCGCCU--GCGCUGCgaagcauCCgcagucgCCCGCUCu -3' miRNA: 3'- gCGUGGGuuUGCGGCG-------GGa------GGGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 124822 | 0.68 | 0.561924 |
Target: 5'- -uCACCCAGACGgUGUUCUCCgCGCg- -3' miRNA: 3'- gcGUGGGUUUGCgGCGGGAGG-GCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 32441 | 0.68 | 0.558041 |
Target: 5'- gGCGCCCGcucccaGCCGCCCgggaggaggccuccUCCCuccggggGCUCg -3' miRNA: 3'- gCGUGGGUuug---CGGCGGG--------------AGGG-------CGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 112350 | 0.68 | 0.55223 |
Target: 5'- gGCACCCAcg-GCuUGUCCgggCCUGCUCg -3' miRNA: 3'- gCGUGGGUuugCG-GCGGGa--GGGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 123493 | 0.68 | 0.542586 |
Target: 5'- uGCGCUCGacaGACGCCcugaCCCUCCguagcUGCUCa -3' miRNA: 3'- gCGUGGGU---UUGCGGc---GGGAGG-----GCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 12856 | 0.68 | 0.532999 |
Target: 5'- aGCGCCaCGcgcCGCCGCCUgugCCUGCg- -3' miRNA: 3'- gCGUGG-GUuu-GCGGCGGGa--GGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 27367 | 0.68 | 0.532999 |
Target: 5'- gCGCACUgAuugcGCGCgGCCCUCCgcgaGCUg -3' miRNA: 3'- -GCGUGGgUu---UGCGgCGGGAGGg---CGAg -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 8466 | 0.68 | 0.523474 |
Target: 5'- cCGCaugGCCCAgcggggGACGCCGUCCaccagCCCcCUCa -3' miRNA: 3'- -GCG---UGGGU------UUGCGGCGGGa----GGGcGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 42796 | 0.68 | 0.523474 |
Target: 5'- uGCugUgGGGCGCCcacGCCCagaagUCCUGCUCc -3' miRNA: 3'- gCGugGgUUUGCGG---CGGG-----AGGGCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 35960 | 0.68 | 0.523474 |
Target: 5'- aGC-CCCGgcGugGCCcagGCCCUCCgccgCGCUCc -3' miRNA: 3'- gCGuGGGU--UugCGG---CGGGAGG----GCGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 10534 | 0.68 | 0.514014 |
Target: 5'- gCGCGCCCGcg-GCCGCaagCUCCCuCUCc -3' miRNA: 3'- -GCGUGGGUuugCGGCGg--GAGGGcGAG- -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 39059 | 0.69 | 0.476921 |
Target: 5'- aGCGCCaggcugagaAGACGCCaGCCCagaaccaacUCCCGCa- -3' miRNA: 3'- gCGUGGg--------UUUGCGG-CGGG---------AGGGCGag -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 25347 | 0.69 | 0.476921 |
Target: 5'- gGUGCUCAGcuACuCCGCCCUgCCGCUg -3' miRNA: 3'- gCGUGGGUU--UGcGGCGGGAgGGCGAg -5' |
|||||||
2643 | 3' | -61.6 | NC_001491.2 | + | 6443 | 0.69 | 0.476921 |
Target: 5'- uGCGCUUuu-CGCCuCCCcCCCGCUCc -3' miRNA: 3'- gCGUGGGuuuGCGGcGGGaGGGCGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home