miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26431 5' -60.6 NC_005345.2 + 3618 0.67 0.366594
Target:  5'- aCCCCaCGGcccGCGccGCAGGUGUGccguccgcagcccGGCGGc -3'
miRNA:   3'- -GGGG-GCC---CGCu-CGUCCACAU-------------UCGCCc -5'
26431 5' -60.6 NC_005345.2 + 40237 0.67 0.366594
Target:  5'- gCCgCCGugauccuGGCGAGCGGGgacgGggcgccGGCGGGc -3'
miRNA:   3'- -GGgGGC-------CCGCUCGUCCa---Cau----UCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 36913 0.67 0.362451
Target:  5'- --aCCGGGUGAGCGGGUcaucgccacggcucgGgaGGCGGcGg -3'
miRNA:   3'- gggGGCCCGCUCGUCCA---------------CauUCGCC-C- -5'
26431 5' -60.6 NC_005345.2 + 36018 0.67 0.359161
Target:  5'- gCCCCCuugacgcacGGCGGGCguucgAGGUGaAAGCGcGGc -3'
miRNA:   3'- -GGGGGc--------CCGCUCG-----UCCACaUUCGC-CC- -5'
26431 5' -60.6 NC_005345.2 + 5053 0.68 0.327417
Target:  5'- aUCgaGGGCGAGCcGGUGUGcuGCGGu -3'
miRNA:   3'- gGGggCCCGCUCGuCCACAUu-CGCCc -5'
26431 5' -60.6 NC_005345.2 + 18831 0.69 0.302106
Target:  5'- cCUCCCGGGCcuggucaacgGGGCAGGcgagcagguGCGGGc -3'
miRNA:   3'- -GGGGGCCCG----------CUCGUCCacauu----CGCCC- -5'
26431 5' -60.6 NC_005345.2 + 21689 0.69 0.290727
Target:  5'- cCCCCCucaGGGCccGGgAGGUGcu-GCGGGg -3'
miRNA:   3'- -GGGGG---CCCGc-UCgUCCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 20375 0.69 0.290727
Target:  5'- gCCCCGGaCGGGUcgauGGUGUugaccGCGGGc -3'
miRNA:   3'- gGGGGCCcGCUCGu---CCACAuu---CGCCC- -5'
26431 5' -60.6 NC_005345.2 + 2685 0.69 0.283787
Target:  5'- gCCgCGGGCGuugucgauGUGGGUGUcGGCGGc -3'
miRNA:   3'- gGGgGCCCGCu-------CGUCCACAuUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 1741 0.7 0.262461
Target:  5'- uCCCCCGGGCaGGCAGGcgacguuugaccGUcGGCcauGGGg -3'
miRNA:   3'- -GGGGGCCCGcUCGUCCa-----------CAuUCG---CCC- -5'
26431 5' -60.6 NC_005345.2 + 48000 0.7 0.257337
Target:  5'- cCCCUCGcGGCGcGguGGUGUcccAGGCuccGGGg -3'
miRNA:   3'- -GGGGGC-CCGCuCguCCACA---UUCG---CCC- -5'
26431 5' -60.6 NC_005345.2 + 2369 0.7 0.232938
Target:  5'- -gCCCGGucgcgaccucGCGGGCccaaGGGUGUucGCGGGu -3'
miRNA:   3'- ggGGGCC----------CGCUCG----UCCACAuuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 29620 0.7 0.232938
Target:  5'- uCgCCCGGGagaCGGGCGGGagacGGGCGGGa -3'
miRNA:   3'- -GgGGGCCC---GCUCGUCCaca-UUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 9456 0.71 0.22715
Target:  5'- gUCCCGGGCGGuGUccGGUGau-GCGGGg -3'
miRNA:   3'- gGGGGCCCGCU-CGu-CCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 8938 0.71 0.21594
Target:  5'- gCCCCCguGGGCGGGCugcGGGUGcu--CGGGc -3'
miRNA:   3'- -GGGGG--CCCGCUCG---UCCACauucGCCC- -5'
26431 5' -60.6 NC_005345.2 + 38185 0.71 0.205208
Target:  5'- gCCCguCCGGGaCGGGCguaGGGcGgcGGCGGGa -3'
miRNA:   3'- -GGG--GGCCC-GCUCG---UCCaCauUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 9328 0.71 0.204684
Target:  5'- -aCCCGGGCGGcgaccagugcgacGCAuGGUGgcuGCGGGc -3'
miRNA:   3'- ggGGGCCCGCU-------------CGU-CCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 35820 0.71 0.202079
Target:  5'- gUCCCUucuucugucgggcgaGGGCGcGGCGGGUGgcucgguucGGGCGGGg -3'
miRNA:   3'- -GGGGG---------------CCCGC-UCGUCCACa--------UUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 37567 0.72 0.19494
Target:  5'- gCCCgaggCGGGCGcaGGCGGGcUGcAGGCGGGc -3'
miRNA:   3'- gGGG----GCCCGC--UCGUCC-ACaUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 35108 0.72 0.175748
Target:  5'- -gUgCGGGCGuGGCGGGUGUuguucauGGCGGGc -3'
miRNA:   3'- ggGgGCCCGC-UCGUCCACAu------UCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.