miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26432 3' -55.3 NC_005345.2 + 12654 0.66 0.69636
Target:  5'- gGCGcGGucGGCCgCCGuuGGCGUACc -3'
miRNA:   3'- aUGC-UCuuCUGGgGGCggCUGUAUGu -5'
26432 3' -55.3 NC_005345.2 + 21037 0.66 0.69636
Target:  5'- -cCGAGAGGACCCCC-CauGCAccUGCGc -3'
miRNA:   3'- auGCUCUUCUGGGGGcGgcUGU--AUGU- -5'
26432 3' -55.3 NC_005345.2 + 42706 0.66 0.693068
Target:  5'- cGCGAcccggcuggauaucGgcGACCaCUCGCCGACcgACGg -3'
miRNA:   3'- aUGCU--------------CuuCUGG-GGGCGGCUGuaUGU- -5'
26432 3' -55.3 NC_005345.2 + 16893 0.66 0.685366
Target:  5'- gGCG-GAAGGCgCCCGUCGAg--GCAc -3'
miRNA:   3'- aUGCuCUUCUGgGGGCGGCUguaUGU- -5'
26432 3' -55.3 NC_005345.2 + 47874 0.66 0.685366
Target:  5'- gGCGAcGguGACgUCgGCCGGCGUGCu -3'
miRNA:   3'- aUGCU-CuuCUGgGGgCGGCUGUAUGu -5'
26432 3' -55.3 NC_005345.2 + 14217 0.66 0.674319
Target:  5'- -cCGAGcAGGCCCUCGCCGcCGc--- -3'
miRNA:   3'- auGCUCuUCUGGGGGCGGCuGUaugu -5'
26432 3' -55.3 NC_005345.2 + 31790 0.66 0.663231
Target:  5'- gUACGAGcccGACCaguCCGCCGACcucgACGa -3'
miRNA:   3'- -AUGCUCuu-CUGGg--GGCGGCUGua--UGU- -5'
26432 3' -55.3 NC_005345.2 + 10682 0.66 0.652114
Target:  5'- cGCGGGAAGugCCCgCGCUGugcCcgGCc -3'
miRNA:   3'- aUGCUCUUCugGGG-GCGGCu--GuaUGu -5'
26432 3' -55.3 NC_005345.2 + 44808 0.66 0.652114
Target:  5'- -cCGAGGcaGGACCCCgGCuCGGCcgAUg -3'
miRNA:   3'- auGCUCU--UCUGGGGgCG-GCUGuaUGu -5'
26432 3' -55.3 NC_005345.2 + 41199 0.66 0.640978
Target:  5'- gACGGGAuccCCgCCCGCCGGCucgACu -3'
miRNA:   3'- aUGCUCUucuGG-GGGCGGCUGua-UGu -5'
26432 3' -55.3 NC_005345.2 + 48595 0.67 0.60756
Target:  5'- gGCGGgcGAGGACCCaCGCCGGCuguucggaggGCAu -3'
miRNA:   3'- aUGCU--CUUCUGGGgGCGGCUGua--------UGU- -5'
26432 3' -55.3 NC_005345.2 + 42420 0.67 0.60756
Target:  5'- aUGCGGGAcguGGGCUugcacaccgugCCCGCCGGC-UGCu -3'
miRNA:   3'- -AUGCUCU---UCUGG-----------GGGCGGCUGuAUGu -5'
26432 3' -55.3 NC_005345.2 + 236 0.67 0.574337
Target:  5'- gGCGccacAGGcagAGACCCCCGCCG-UGUAUg -3'
miRNA:   3'- aUGC----UCU---UCUGGGGGCGGCuGUAUGu -5'
26432 3' -55.3 NC_005345.2 + 36785 0.68 0.563348
Target:  5'- cUGCGAGGcgucGGGCCCCgugcaGCCGAU-UGCGg -3'
miRNA:   3'- -AUGCUCU----UCUGGGGg----CGGCUGuAUGU- -5'
26432 3' -55.3 NC_005345.2 + 13582 0.68 0.563348
Target:  5'- cGCGAcGAAGAUCguguggcucgaCCCGCCGGCgGUGCc -3'
miRNA:   3'- aUGCU-CUUCUGG-----------GGGCGGCUG-UAUGu -5'
26432 3' -55.3 NC_005345.2 + 19152 0.68 0.552416
Target:  5'- -cCGGGAcgucgucgccGGGCCCguacggcugcCCGUCGACGUGCAc -3'
miRNA:   3'- auGCUCU----------UCUGGG----------GGCGGCUGUAUGU- -5'
26432 3' -55.3 NC_005345.2 + 35961 0.68 0.551326
Target:  5'- aGCGGGGuugacuuccugucGGACCCCgGCCG-CAUGu- -3'
miRNA:   3'- aUGCUCU-------------UCUGGGGgCGGCuGUAUgu -5'
26432 3' -55.3 NC_005345.2 + 17808 0.68 0.541549
Target:  5'- aGCcGGAucAUCCCUGCCGGCGUGCc -3'
miRNA:   3'- aUGcUCUucUGGGGGCGGCUGUAUGu -5'
26432 3' -55.3 NC_005345.2 + 34823 0.68 0.520038
Target:  5'- gUGCGccu-GcCCCUCGCCGACGUGCu -3'
miRNA:   3'- -AUGCucuuCuGGGGGCGGCUGUAUGu -5'
26432 3' -55.3 NC_005345.2 + 3654 0.69 0.488431
Target:  5'- cGCG-GAcgcGGCCCCCaccaccuucGCCGACAUGCc -3'
miRNA:   3'- aUGCuCUu--CUGGGGG---------CGGCUGUAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.