miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26435 5' -40 NC_005354.1 + 8967 0.66 0.999998
Target:  5'- --aGAUAGGGCuguuAGCUGAUcgguAGUACCa -3'
miRNA:   3'- cgaCUAUUUCG----UUGGUUAuu--UCAUGG- -5'
26435 5' -40 NC_005354.1 + 12515 0.65 0.999998
Target:  5'- uGCUGAggcaaugguaAAAGCGACUAGUGA--UGCa -3'
miRNA:   3'- -CGACUa---------UUUCGUUGGUUAUUucAUGg -5'
26435 5' -40 NC_005354.1 + 27527 0.66 0.999998
Target:  5'- --aGAUGcuAAGCGACCAAUcuaAGGGcGCUg -3'
miRNA:   3'- cgaCUAU--UUCGUUGGUUA---UUUCaUGG- -5'
26435 5' -40 NC_005354.1 + 4309 0.66 0.999994
Target:  5'- uCUGAUAAAGCAAaaGAUAGA--ACUu -3'
miRNA:   3'- cGACUAUUUCGUUggUUAUUUcaUGG- -5'
26435 5' -40 NC_005354.1 + 5884 0.66 0.999994
Target:  5'- aGCUGA---GGU-ACCAAaucAGUACCg -3'
miRNA:   3'- -CGACUauuUCGuUGGUUauuUCAUGG- -5'
26435 5' -40 NC_005354.1 + 37675 0.66 0.999994
Target:  5'- aCUGGUGgcGCAAUUAAcuuacgcUGGGGUGCUa -3'
miRNA:   3'- cGACUAUuuCGUUGGUU-------AUUUCAUGG- -5'
26435 5' -40 NC_005354.1 + 21783 0.68 0.999894
Target:  5'- aCUGAUGGuGCAaaGCCGAcUGAAGaUGCUa -3'
miRNA:   3'- cGACUAUUuCGU--UGGUU-AUUUC-AUGG- -5'
26435 5' -40 NC_005354.1 + 25497 0.7 0.999549
Target:  5'- aUUGGUAcAGCAguaGCCAauAUGAAGaACCg -3'
miRNA:   3'- cGACUAUuUCGU---UGGU--UAUUUCaUGG- -5'
26435 5' -40 NC_005354.1 + 27142 0.71 0.99844
Target:  5'- uCUGAUAuugguAAGCAauggcagaacuuaGCUAAUAAuAGUGCCa -3'
miRNA:   3'- cGACUAU-----UUCGU-------------UGGUUAUU-UCAUGG- -5'
26435 5' -40 NC_005354.1 + 10552 0.72 0.995745
Target:  5'- uGUUcGUAAGGCAACUGAuUGGAGUACa -3'
miRNA:   3'- -CGAcUAUUUCGUUGGUU-AUUUCAUGg -5'
26435 5' -40 NC_005354.1 + 33075 0.74 0.986095
Target:  5'- gGCUGAUAAuGGCAaaauuuuGCCAGUAcAGUgguaugACCa -3'
miRNA:   3'- -CGACUAUU-UCGU-------UGGUUAUuUCA------UGG- -5'
26435 5' -40 NC_005354.1 + 26981 1.21 0.006599
Target:  5'- cGCUGAUAAAGCAACCAAUAAAGUACCa -3'
miRNA:   3'- -CGACUAUUUCGUUGGUUAUUUCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.