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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26437 | 3' | -45.1 | NC_005355.1 | + | 39433 | 0.78 | 0.505809 |
Target: 5'- aAUUugUUGUAUGcAAAAAAGCCACUCCa -3' miRNA: 3'- -UAAuuGACGUAC-UUUUUUCGGUGGGG- -5' |
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26437 | 3' | -45.1 | NC_005355.1 | + | 28490 | 0.66 | 0.991319 |
Target: 5'- ---uACUGCAaacUGGgcuAAGAAGCUugauuuuACCCCa -3' miRNA: 3'- uaauUGACGU---ACU---UUUUUCGG-------UGGGG- -5' |
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26437 | 3' | -45.1 | NC_005355.1 | + | 20666 | 1.13 | 0.00377 |
Target: 5'- aAUUAACUGCAUGAAAAAAGCCACCCCa -3' miRNA: 3'- -UAAUUGACGUACUUUUUUCGGUGGGG- -5' |
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26437 | 3' | -45.1 | NC_005355.1 | + | 8789 | 0.67 | 0.975979 |
Target: 5'- --gAAUUGCAucUGAAGAAgauacugaugcuaaAGCUuuGCCCCa -3' miRNA: 3'- uaaUUGACGU--ACUUUUU--------------UCGG--UGGGG- -5' |
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26437 | 3' | -45.1 | NC_005355.1 | + | 1819 | 0.66 | 0.990004 |
Target: 5'- --gAACUugAUGAAGAgucgucaucaGAGCCACuCCCg -3' miRNA: 3'- uaaUUGAcgUACUUUU----------UUCGGUG-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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