miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2644 3' -51.3 NC_001491.2 + 91401 0.66 0.987461
Target:  5'- aCgGCCAGGUg--CUGCguGCG-GGCu -3'
miRNA:   3'- gGaCGGUCCAaaaGACGauCGUaCCG- -5'
2644 3' -51.3 NC_001491.2 + 13023 0.66 0.986977
Target:  5'- gUUGCCGGGgcugCUgcGCUAGCAaaaaucgugucugcUGGUa -3'
miRNA:   3'- gGACGGUCCaaaaGA--CGAUCGU--------------ACCG- -5'
2644 3' -51.3 NC_001491.2 + 22415 0.66 0.985791
Target:  5'- gCUGCCAG---UUCUGCgGGguUcGGCa -3'
miRNA:   3'- gGACGGUCcaaAAGACGaUCguA-CCG- -5'
2644 3' -51.3 NC_001491.2 + 2477 0.67 0.981945
Target:  5'- cCCggGCCGGGgggccgCUGC-AGCG-GGCc -3'
miRNA:   3'- -GGa-CGGUCCaaaa--GACGaUCGUaCCG- -5'
2644 3' -51.3 NC_001491.2 + 3803 0.67 0.978343
Target:  5'- --cGCCGGGgccucgggcugUUGCUGGC-UGGCc -3'
miRNA:   3'- ggaCGGUCCaaaa-------GACGAUCGuACCG- -5'
2644 3' -51.3 NC_001491.2 + 59047 0.67 0.977365
Target:  5'- --aGgCGGGcUUUUUcGUUGGCGUGGCa -3'
miRNA:   3'- ggaCgGUCC-AAAAGaCGAUCGUACCG- -5'
2644 3' -51.3 NC_001491.2 + 53163 0.67 0.971982
Target:  5'- --cGCUAGGggcuaggUCUGCcAGCGcGGCa -3'
miRNA:   3'- ggaCGGUCCaaa----AGACGaUCGUaCCG- -5'
2644 3' -51.3 NC_001491.2 + 112515 0.68 0.958565
Target:  5'- --aGUUAGGUUUUCgcUGCUGGUGggaGGCg -3'
miRNA:   3'- ggaCGGUCCAAAAG--ACGAUCGUa--CCG- -5'
2644 3' -51.3 NC_001491.2 + 114798 0.69 0.950429
Target:  5'- gCCU-CCAGGU----UGUUGGCAUGGg -3'
miRNA:   3'- -GGAcGGUCCAaaagACGAUCGUACCg -5'
2644 3' -51.3 NC_001491.2 + 136834 0.69 0.945987
Target:  5'- aCCUGuCCAGGUccUC-GUUGGUcuuUGGCg -3'
miRNA:   3'- -GGAC-GGUCCAaaAGaCGAUCGu--ACCG- -5'
2644 3' -51.3 NC_001491.2 + 8789 0.69 0.925658
Target:  5'- cCCUGCgCAGGgcg-CUGCUGGauuuuuacgcCAUGGg -3'
miRNA:   3'- -GGACG-GUCCaaaaGACGAUC----------GUACCg -5'
2644 3' -51.3 NC_001491.2 + 35727 0.7 0.901194
Target:  5'- uUCUGCCGGGUggcgCUGCUGGagcccgacgcCGaGGCc -3'
miRNA:   3'- -GGACGGUCCAaaa-GACGAUC----------GUaCCG- -5'
2644 3' -51.3 NC_001491.2 + 2678 0.7 0.894441
Target:  5'- cCCgacgGUCGGGgcccUCgGCUGGCAUGGg -3'
miRNA:   3'- -GGa---CGGUCCaaa-AGaCGAUCGUACCg -5'
2644 3' -51.3 NC_001491.2 + 48544 0.71 0.880192
Target:  5'- gCUgGCCAGGUgcaCcGCcAGCGUGGCc -3'
miRNA:   3'- gGA-CGGUCCAaaaGaCGaUCGUACCG- -5'
2644 3' -51.3 NC_001491.2 + 89859 0.71 0.870414
Target:  5'- uCCUGCuuguccagagucucCAGGUUUUCUGUaaacgugucuaUAGCccuUGGCu -3'
miRNA:   3'- -GGACG--------------GUCCAAAAGACG-----------AUCGu--ACCG- -5'
2644 3' -51.3 NC_001491.2 + 8663 0.74 0.756882
Target:  5'- cCCggggGCCAGGggcgUUCUGCgccccGCcGUGGCg -3'
miRNA:   3'- -GGa---CGGUCCaa--AAGACGau---CG-UACCG- -5'
2644 3' -51.3 NC_001491.2 + 11716 0.75 0.705784
Target:  5'- -gUGCUGGGguccgcgCUGCUGGCAUcGGCg -3'
miRNA:   3'- ggACGGUCCaaaa---GACGAUCGUA-CCG- -5'
2644 3' -51.3 NC_001491.2 + 141561 0.75 0.671052
Target:  5'- --aGCCGGGUUUggagagauugacgaUUgcucGCUGGCAUGGCg -3'
miRNA:   3'- ggaCGGUCCAAA--------------AGa---CGAUCGUACCG- -5'
2644 3' -51.3 NC_001491.2 + 116554 1.14 0.003712
Target:  5'- gCCUGCCAGGUUUUCUGCUAGCAUGGCc -3'
miRNA:   3'- -GGACGGUCCAAAAGACGAUCGUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.