miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26441 3' -68.1 NC_005357.1 + 41742 1.09 0.000049
Target:  5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3'
miRNA:   3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 688 0.8 0.013199
Target:  5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3'
miRNA:   3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5'
26441 3' -68.1 NC_005357.1 + 14593 0.77 0.019975
Target:  5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3'
miRNA:   3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5'
26441 3' -68.1 NC_005357.1 + 27839 0.75 0.031013
Target:  5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 18680 0.74 0.041894
Target:  5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 41457 0.73 0.043051
Target:  5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3'
miRNA:   3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 36859 0.72 0.050679
Target:  5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3'
miRNA:   3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 27503 0.72 0.053503
Target:  5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3'
miRNA:   3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 5100 0.72 0.059616
Target:  5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3'
miRNA:   3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5'
26441 3' -68.1 NC_005357.1 + 24302 0.71 0.07007
Target:  5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3'
miRNA:   3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5'
26441 3' -68.1 NC_005357.1 + 23953 0.71 0.07007
Target:  5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3'
miRNA:   3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5'
26441 3' -68.1 NC_005357.1 + 1752 0.71 0.071975
Target:  5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3'
miRNA:   3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5'
26441 3' -68.1 NC_005357.1 + 35187 0.7 0.073339
Target:  5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3'
miRNA:   3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 4804 0.7 0.073931
Target:  5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3'
miRNA:   3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 10062 0.7 0.080108
Target:  5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3'
miRNA:   3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5'
26441 3' -68.1 NC_005357.1 + 41151 0.7 0.082275
Target:  5'- uGGGUcgagGGCCgGGaauaCCGGCGCuCGCCGg-- -3'
miRNA:   3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 36027 0.7 0.084497
Target:  5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3'
miRNA:   3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 6389 0.69 0.089115
Target:  5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3'
miRNA:   3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 16615 0.69 0.092489
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26441 3' -68.1 NC_005357.1 + 42271 0.69 0.093723
Target:  5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3'
miRNA:   3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.