Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26441 | 3' | -68.1 | NC_005357.1 | + | 21772 | 0.67 | 0.146525 |
Target: 5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3' miRNA: 3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31732 | 0.67 | 0.146525 |
Target: 5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3' miRNA: 3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 14724 | 0.67 | 0.142803 |
Target: 5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3' miRNA: 3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28988 | 0.67 | 0.142803 |
Target: 5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3' miRNA: 3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 17854 | 0.67 | 0.139167 |
Target: 5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3' miRNA: 3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 8215 | 0.67 | 0.139167 |
Target: 5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3' miRNA: 3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27441 | 0.67 | 0.138809 |
Target: 5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3' miRNA: 3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 20672 | 0.67 | 0.137027 |
Target: 5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3' miRNA: 3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31945 | 0.67 | 0.135617 |
Target: 5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3' miRNA: 3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 41620 | 0.67 | 0.135617 |
Target: 5'- cGGCaagGGCUgGGCgCGGCGCguCGCCGg-- -3' miRNA: 3'- cCCG---CCGGgCCG-GCCGCG--GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 33210 | 0.67 | 0.135617 |
Target: 5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3' miRNA: 3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 7636 | 0.67 | 0.135617 |
Target: 5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3' miRNA: 3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 1031 | 0.67 | 0.13215 |
Target: 5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3' miRNA: 3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 39990 | 0.67 | 0.13215 |
Target: 5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3' miRNA: 3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31314 | 0.67 | 0.128765 |
Target: 5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3' miRNA: 3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31046 | 0.67 | 0.128431 |
Target: 5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3' miRNA: 3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25801 | 0.67 | 0.126773 |
Target: 5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3' miRNA: 3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 8170 | 0.67 | 0.125461 |
Target: 5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3' miRNA: 3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 40403 | 0.68 | 0.122235 |
Target: 5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3' miRNA: 3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 19872 | 0.68 | 0.122235 |
Target: 5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3' miRNA: 3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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