miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26441 3' -68.1 NC_005357.1 + 21772 0.67 0.146525
Target:  5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3'
miRNA:   3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5'
26441 3' -68.1 NC_005357.1 + 31732 0.67 0.146525
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26441 3' -68.1 NC_005357.1 + 14724 0.67 0.142803
Target:  5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3'
miRNA:   3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5'
26441 3' -68.1 NC_005357.1 + 28988 0.67 0.142803
Target:  5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3'
miRNA:   3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 17854 0.67 0.139167
Target:  5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3'
miRNA:   3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5'
26441 3' -68.1 NC_005357.1 + 8215 0.67 0.139167
Target:  5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3'
miRNA:   3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 27441 0.67 0.138809
Target:  5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3'
miRNA:   3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 20672 0.67 0.137027
Target:  5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3'
miRNA:   3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5'
26441 3' -68.1 NC_005357.1 + 31945 0.67 0.135617
Target:  5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3'
miRNA:   3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5'
26441 3' -68.1 NC_005357.1 + 41620 0.67 0.135617
Target:  5'- cGGCaagGGCUgGGCgCGGCGCguCGCCGg-- -3'
miRNA:   3'- cCCG---CCGGgCCG-GCCGCG--GCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 33210 0.67 0.135617
Target:  5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3'
miRNA:   3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 7636 0.67 0.135617
Target:  5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3'
miRNA:   3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 1031 0.67 0.13215
Target:  5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3'
miRNA:   3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 39990 0.67 0.13215
Target:  5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3'
miRNA:   3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 31314 0.67 0.128765
Target:  5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3'
miRNA:   3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5'
26441 3' -68.1 NC_005357.1 + 31046 0.67 0.128431
Target:  5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3'
miRNA:   3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 25801 0.67 0.126773
Target:  5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3'
miRNA:   3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5'
26441 3' -68.1 NC_005357.1 + 8170 0.67 0.125461
Target:  5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3'
miRNA:   3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5'
26441 3' -68.1 NC_005357.1 + 40403 0.68 0.122235
Target:  5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3'
miRNA:   3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5'
26441 3' -68.1 NC_005357.1 + 19872 0.68 0.122235
Target:  5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3'
miRNA:   3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.