Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26441 | 3' | -68.1 | NC_005357.1 | + | 23953 | 0.71 | 0.07007 |
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Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 5100 | 0.72 | 0.059616 |
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Target: 5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3' miRNA: 3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 27503 | 0.72 | 0.053503 |
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Target: 5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3' miRNA: 3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 36859 | 0.72 | 0.050679 |
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Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 41457 | 0.73 | 0.043051 |
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Target: 5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3' miRNA: 3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 18680 | 0.74 | 0.041894 |
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Target: 5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 27839 | 0.75 | 0.031013 |
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Target: 5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 14593 | 0.77 | 0.019975 |
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Target: 5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3' miRNA: 3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 688 | 0.8 | 0.013199 |
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Target: 5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3' miRNA: 3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5' |
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| 26441 | 3' | -68.1 | NC_005357.1 | + | 41742 | 1.09 | 0.000049 |
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Target: 5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3' miRNA: 3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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