miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26441 5' -56.6 NC_005357.1 + 21960 0.66 0.5323
Target:  5'- uGGCUAUGGCCUUcgccgaaGGGaACCGGaaCGAg -3'
miRNA:   3'- -CCGAUGUCGGAA-------CCCgUGGCUgaGCU- -5'
26441 5' -56.6 NC_005357.1 + 41468 0.74 0.182571
Target:  5'- uGGCUGCAagcuGCCgUGGGCACCGcGCagGAc -3'
miRNA:   3'- -CCGAUGU----CGGaACCCGUGGC-UGagCU- -5'
26441 5' -56.6 NC_005357.1 + 38174 0.7 0.340598
Target:  5'- cGGCgcugACGGCC---GGCACCGACUaCGc -3'
miRNA:   3'- -CCGa---UGUCGGaacCCGUGGCUGA-GCu -5'
26441 5' -56.6 NC_005357.1 + 7448 0.7 0.340598
Target:  5'- cGGCUuCGGCCUucgcgcgaaUGGccuuGCACCagGACUCGAc -3'
miRNA:   3'- -CCGAuGUCGGA---------ACC----CGUGG--CUGAGCU- -5'
26441 5' -56.6 NC_005357.1 + 14445 0.69 0.383009
Target:  5'- cGGCUACAGCCUgaUGGcccagccCACCGaggacguGCUCGc -3'
miRNA:   3'- -CCGAUGUCGGA--ACCc------GUGGC-------UGAGCu -5'
26441 5' -56.6 NC_005357.1 + 9765 0.69 0.383911
Target:  5'- gGGCUucacgucggGCAGCUUcGcGGCGCCGAacUUCGAc -3'
miRNA:   3'- -CCGA---------UGUCGGAaC-CCGUGGCU--GAGCU- -5'
26441 5' -56.6 NC_005357.1 + 13380 0.67 0.480719
Target:  5'- uGGcCUACgAGCCgccggUGGGUAUCGACcuggcCGAa -3'
miRNA:   3'- -CC-GAUG-UCGGa----ACCCGUGGCUGa----GCU- -5'
26441 5' -56.6 NC_005357.1 + 9911 0.67 0.491058
Target:  5'- cGGCaucacCAGCCUgcacGGGCGCgGAguuCUCGGc -3'
miRNA:   3'- -CCGau---GUCGGAa---CCCGUGgCU---GAGCU- -5'
26441 5' -56.6 NC_005357.1 + 28858 0.67 0.501498
Target:  5'- uGGCgagcGCGcguucaacaucGCCgUGGGCACCGAgUCa- -3'
miRNA:   3'- -CCGa---UGU-----------CGGaACCCGUGGCUgAGcu -5'
26441 5' -56.6 NC_005357.1 + 7148 0.75 0.156503
Target:  5'- cGGCUGCGGCCUggaugaccagggccGGGCGCUugucgGAUUCGGg -3'
miRNA:   3'- -CCGAUGUCGGAa-------------CCCGUGG-----CUGAGCU- -5'
26441 5' -56.6 NC_005357.1 + 15181 0.77 0.120237
Target:  5'- cGGCcaAgAGCCUgGGGCGCCGGCUgGAc -3'
miRNA:   3'- -CCGa-UgUCGGAaCCCGUGGCUGAgCU- -5'
26441 5' -56.6 NC_005357.1 + 41778 1.1 0.000423
Target:  5'- uGGCUACAGCCUUGGGCACCGACUCGAc -3'
miRNA:   3'- -CCGAUGUCGGAACCCGUGGCUGAGCU- -5'
26441 5' -56.6 NC_005357.1 + 10323 0.66 0.5323
Target:  5'- cGGCaGCGGCCa-GGGCguugagcaacgcgGCCGugUUGGc -3'
miRNA:   3'- -CCGaUGUCGGaaCCCG-------------UGGCugAGCU- -5'
26441 5' -56.6 NC_005357.1 + 32108 0.66 0.576919
Target:  5'- cGGCUACGGCCU--GGCgaaACUGGCgaagUGGc -3'
miRNA:   3'- -CCGAUGUCGGAacCCG---UGGCUGa---GCU- -5'
26441 5' -56.6 NC_005357.1 + 18667 0.66 0.544163
Target:  5'- cGGCgcauCGGCCcgGuGGCGCCGGCaUGGc -3'
miRNA:   3'- -CCGau--GUCGGaaC-CCGUGGCUGaGCU- -5'
26441 5' -56.6 NC_005357.1 + 6598 0.66 0.573621
Target:  5'- gGGCUGCGGUCUUugucgaugaccagcGGGCGCgUGGCgcugCGc -3'
miRNA:   3'- -CCGAUGUCGGAA--------------CCCGUG-GCUGa---GCu -5'
26441 5' -56.6 NC_005357.1 + 31844 0.66 0.555021
Target:  5'- aGGCUGCGcGCC-UGGGUACUacGCcCGAg -3'
miRNA:   3'- -CCGAUGU-CGGaACCCGUGGc-UGaGCU- -5'
26441 5' -56.6 NC_005357.1 + 30844 0.66 0.555021
Target:  5'- cGGCcagccgGCGGCCcUGGGCGgcaUGGCUuCGAu -3'
miRNA:   3'- -CCGa-----UGUCGGaACCCGUg--GCUGA-GCU- -5'
26441 5' -56.6 NC_005357.1 + 39968 0.67 0.512035
Target:  5'- uGCaGCAcGCCUUGugcaacaucguGGCGCCGAUcuUCGAg -3'
miRNA:   3'- cCGaUGU-CGGAAC-----------CCGUGGCUG--AGCU- -5'
26441 5' -56.6 NC_005357.1 + 36906 0.67 0.522663
Target:  5'- aGCUGCcGGCCUggaacuaccaGGCACCGAgUUGGc -3'
miRNA:   3'- cCGAUG-UCGGAac--------CCGUGGCUgAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.