miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26441 5' -56.6 NC_005357.1 + 7448 0.7 0.340598
Target:  5'- cGGCUuCGGCCUucgcgcgaaUGGccuuGCACCagGACUCGAc -3'
miRNA:   3'- -CCGAuGUCGGA---------ACC----CGUGG--CUGAGCU- -5'
26441 5' -56.6 NC_005357.1 + 38174 0.7 0.340598
Target:  5'- cGGCgcugACGGCC---GGCACCGACUaCGc -3'
miRNA:   3'- -CCGa---UGUCGGaacCCGUGGCUGA-GCu -5'
26441 5' -56.6 NC_005357.1 + 26886 0.71 0.300934
Target:  5'- aGGCUgacgGCAGugugaCCUUGGGCAUCGACg--- -3'
miRNA:   3'- -CCGA----UGUC-----GGAACCCGUGGCUGagcu -5'
26441 5' -56.6 NC_005357.1 + 41468 0.74 0.182571
Target:  5'- uGGCUGCAagcuGCCgUGGGCACCGcGCagGAc -3'
miRNA:   3'- -CCGAUGU----CGGaACCCGUGGC-UGagCU- -5'
26441 5' -56.6 NC_005357.1 + 7148 0.75 0.156503
Target:  5'- cGGCUGCGGCCUggaugaccagggccGGGCGCUugucgGAUUCGGg -3'
miRNA:   3'- -CCGAUGUCGGAa-------------CCCGUGG-----CUGAGCU- -5'
26441 5' -56.6 NC_005357.1 + 15181 0.77 0.120237
Target:  5'- cGGCcaAgAGCCUgGGGCGCCGGCUgGAc -3'
miRNA:   3'- -CCGa-UgUCGGAaCCCGUGGCUGAgCU- -5'
26441 5' -56.6 NC_005357.1 + 13452 0.77 0.1136
Target:  5'- aGCUugGCGGCCUcGGGCGCgGugUCGGg -3'
miRNA:   3'- cCGA--UGUCGGAaCCCGUGgCugAGCU- -5'
26441 5' -56.6 NC_005357.1 + 41778 1.1 0.000423
Target:  5'- uGGCUACAGCCUUGGGCACCGACUCGAc -3'
miRNA:   3'- -CCGAUGUCGGAACCCGUGGCUGAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.