miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 3' -56.3 NC_005357.1 + 13992 0.66 0.571205
Target:  5'- cGCUGGCCUcgUGCUGcaCAGCUUGa--- -3'
miRNA:   3'- -CGACCGGG--ACGACaaGUUGAGCcgag -5'
26442 3' -56.3 NC_005357.1 + 14268 0.66 0.5601
Target:  5'- gGUUGGCCUgcugcaccaUGCUG-UCGGCgaugCGGCcCa -3'
miRNA:   3'- -CGACCGGG---------ACGACaAGUUGa---GCCGaG- -5'
26442 3' -56.3 NC_005357.1 + 33594 0.66 0.5601
Target:  5'- cGCUGGCCCgcguugcgGCUGgccCGACccagcagaUCGGUa- -3'
miRNA:   3'- -CGACCGGGa-------CGACaa-GUUG--------AGCCGag -5'
26442 3' -56.3 NC_005357.1 + 38384 0.66 0.52718
Target:  5'- cGCUGGCCUgccGCUcgccgCGGC-CGGCUUu -3'
miRNA:   3'- -CGACCGGGa--CGAcaa--GUUGaGCCGAG- -5'
26442 3' -56.3 NC_005357.1 + 23016 0.67 0.495011
Target:  5'- uGCUGcuGCgCCUGCUGUUgGGCUUGuuGCUg -3'
miRNA:   3'- -CGAC--CG-GGACGACAAgUUGAGC--CGAg -5'
26442 3' -56.3 NC_005357.1 + 28098 0.67 0.495011
Target:  5'- aGCaGGCCCgGCaGUUCAGCcaaGGCg- -3'
miRNA:   3'- -CGaCCGGGaCGaCAAGUUGag-CCGag -5'
26442 3' -56.3 NC_005357.1 + 31520 0.67 0.490788
Target:  5'- uGCUGGgCCUcGCUGUguugccguggaaaCAGCgccUCGGUUCg -3'
miRNA:   3'- -CGACCgGGA-CGACAa------------GUUG---AGCCGAG- -5'
26442 3' -56.3 NC_005357.1 + 12765 0.68 0.433578
Target:  5'- gGCcGcGCCCUGCUGggCAA--CGGCUa -3'
miRNA:   3'- -CGaC-CGGGACGACaaGUUgaGCCGAg -5'
26442 3' -56.3 NC_005357.1 + 10858 0.68 0.423773
Target:  5'- aGCaGGCCCUGCgugGcUUCGG-UCGGCg- -3'
miRNA:   3'- -CGaCCGGGACGa--C-AAGUUgAGCCGag -5'
26442 3' -56.3 NC_005357.1 + 12287 0.68 0.404566
Target:  5'- uGCUGGCCCaGCgugcCGGCUaCGGCg- -3'
miRNA:   3'- -CGACCGGGaCGacaaGUUGA-GCCGag -5'
26442 3' -56.3 NC_005357.1 + 14920 0.69 0.389603
Target:  5'- uGCUGGCCggccucaagugccgaCUGCgcgccCAACUCGGCg- -3'
miRNA:   3'- -CGACCGG---------------GACGacaa-GUUGAGCCGag -5'
26442 3' -56.3 NC_005357.1 + 25213 0.7 0.333484
Target:  5'- cGCUGGCCCgGCuUGUUgGug-CGGUUCc -3'
miRNA:   3'- -CGACCGGGaCG-ACAAgUugaGCCGAG- -5'
26442 3' -56.3 NC_005357.1 + 10048 0.73 0.207774
Target:  5'- uGCUGGCuuCCUGCUGggCGGCcggggccUCGGCg- -3'
miRNA:   3'- -CGACCG--GGACGACaaGUUG-------AGCCGag -5'
26442 3' -56.3 NC_005357.1 + 41553 1.12 0.000292
Target:  5'- uGCUGGCCCUGCUGUUCAACUCGGCUCg -3'
miRNA:   3'- -CGACCGGGACGACAAGUUGAGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.