miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 41589 1.08 0.000404
Target:  5'- uCUACACCAACCUGCCCACCUGGCCGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGGGUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 32829 0.82 0.035089
Target:  5'- aCUACACCAGCCgcaacgGCuUCGCCUGGCCGc -3'
miRNA:   3'- -GAUGUGGUUGGa-----CG-GGUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 21816 0.79 0.061298
Target:  5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5'
26442 5' -58.2 NC_005357.1 + 23753 0.76 0.094551
Target:  5'- -aGCGCCAuGCCgGCgCCACCgGGCCGAu -3'
miRNA:   3'- gaUGUGGU-UGGaCG-GGUGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 18266 0.76 0.105976
Target:  5'- cCUGCGCCGagaACUUGCCgGCCgucagcgGGCCGGu -3'
miRNA:   3'- -GAUGUGGU---UGGACGGgUGGa------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 38319 0.75 0.121739
Target:  5'- -gACgACCGcgacgaauucagcGCC-GCCCACCUGGCCGGc -3'
miRNA:   3'- gaUG-UGGU-------------UGGaCGGGUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 38689 0.75 0.115384
Target:  5'- -gGCACCGACgUGCCCACCaccGGCgUGAa -3'
miRNA:   3'- gaUGUGGUUGgACGGGUGGa--CCG-GCU- -5'
26442 5' -58.2 NC_005357.1 + 36036 0.74 0.148467
Target:  5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3'
miRNA:   3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5'
26442 5' -58.2 NC_005357.1 + 24137 0.74 0.132811
Target:  5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3'
miRNA:   3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 35839 0.74 0.144402
Target:  5'- -gACAaaGACCgcaGCCC-CCUGGCCGAg -3'
miRNA:   3'- gaUGUggUUGGa--CGGGuGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 29638 0.73 0.156911
Target:  5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 39744 0.73 0.169925
Target:  5'- aCUACGaCAACCUGCCguggcugaucgaaCACCUGGgCGAc -3'
miRNA:   3'- -GAUGUgGUUGGACGG-------------GUGGACCgGCU- -5'
26442 5' -58.2 NC_005357.1 + 38063 0.73 0.175109
Target:  5'- gCUGCGCauccGCCUGCCguCC-GGCCGAu -3'
miRNA:   3'- -GAUGUGgu--UGGACGGguGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31139 0.73 0.161293
Target:  5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3'
miRNA:   3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 6630 0.73 0.179944
Target:  5'- --cCGCCAGCUUcGCgCGCUUGGCCGGa -3'
miRNA:   3'- gauGUGGUUGGA-CGgGUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31003 0.71 0.228993
Target:  5'- -cACGCgCGACCUGUCCacgggcuuGCC-GGCCGAg -3'
miRNA:   3'- gaUGUG-GUUGGACGGG--------UGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 21127 0.71 0.235092
Target:  5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3'
miRNA:   3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 10914 0.71 0.235092
Target:  5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 968 0.71 0.235092
Target:  5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3'
miRNA:   3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 23288 0.71 0.22244
Target:  5'- gUGCGCCAcgaauGCCUguuugcgGCCgGCaCUGGCCGGg -3'
miRNA:   3'- gAUGUGGU-----UGGA-------CGGgUG-GACCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.