miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 968 0.71 0.235092
Target:  5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3'
miRNA:   3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 988 0.71 0.241326
Target:  5'- cCUuCACCGucGCCcgcUGCCCGCgccaCUGGCCGGg -3'
miRNA:   3'- -GAuGUGGU--UGG---ACGGGUG----GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 1763 0.67 0.423989
Target:  5'- ---gGCCGGCCUGCgCCugGCgCgucgGGCCGAu -3'
miRNA:   3'- gaugUGGUUGGACG-GG--UG-Ga---CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 1866 0.69 0.311405
Target:  5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3'
miRNA:   3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 3582 0.68 0.369058
Target:  5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3'
miRNA:   3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 5508 0.67 0.414497
Target:  5'- -aGCGCCAACUcggUGCCUugguaguuCCaGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGG---ACGGGu-------GGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 5575 0.66 0.483527
Target:  5'- -gGCGCCAACgCUGgCCGCCaccGuGUCGAu -3'
miRNA:   3'- gaUGUGGUUG-GACgGGUGGa--C-CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 6630 0.73 0.179944
Target:  5'- --cCGCCAGCUUcGCgCGCUUGGCCGGa -3'
miRNA:   3'- gauGUGGUUGGA-CGgGUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 9496 0.69 0.327152
Target:  5'- -cAUGCCAGCCUGuUCCGCCgUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGAC-GGGUGG-ACCgGCU- -5'
26442 5' -58.2 NC_005357.1 + 10914 0.71 0.235092
Target:  5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 10975 0.68 0.343481
Target:  5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3'
miRNA:   3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 12206 0.66 0.453226
Target:  5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3'
miRNA:   3'- gaUGUGGuUGGACGGguGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 12758 0.66 0.483527
Target:  5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3'
miRNA:   3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5'
26442 5' -58.2 NC_005357.1 + 13231 0.67 0.414497
Target:  5'- -cGCGuCCGACCUGCCggucauCACCgaGGCCc- -3'
miRNA:   3'- gaUGU-GGUUGGACGG------GUGGa-CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 13290 0.67 0.39591
Target:  5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 13781 0.66 0.453226
Target:  5'- -gGCACCGAUcuggcaCUGCgCGCggaaCUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUG------GACGgGUG----GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 13855 0.69 0.30375
Target:  5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3'
miRNA:   3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 14353 0.67 0.411674
Target:  5'- -gACGCCGcggccACCUGCCCGCUguucgagcagaccgUcGCCGAc -3'
miRNA:   3'- gaUGUGGU-----UGGACGGGUGG--------------AcCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 14810 0.66 0.483527
Target:  5'- cCUGCACCucggcGGCgCUGCCUucGCCcaGGUCGAu -3'
miRNA:   3'- -GAUGUGG-----UUG-GACGGG--UGGa-CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 14989 0.71 0.211497
Target:  5'- -aGCGCCAggGCCUGCggCCGCCgGGCgCGGu -3'
miRNA:   3'- gaUGUGGU--UGGACG--GGUGGaCCG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.