Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 31003 | 0.71 | 0.228993 |
Target: 5'- -cACGCgCGACCUGUCCacgggcuuGCC-GGCCGAg -3' miRNA: 3'- gaUGUG-GUUGGACGGG--------UGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 27238 | 0.71 | 0.228993 |
Target: 5'- uUGCuguCCAGCCggcGCCCcaggcuCUUGGCCGAg -3' miRNA: 3'- gAUGu--GGUUGGa--CGGGu-----GGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 968 | 0.71 | 0.235092 |
Target: 5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3' miRNA: 3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 21127 | 0.71 | 0.235092 |
Target: 5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3' miRNA: 3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 10914 | 0.71 | 0.235092 |
Target: 5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3' miRNA: 3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 41792 | 0.71 | 0.236948 |
Target: 5'- -gGCACCGACUcgacgccggacgccgUGUCCACggcgcugCUGGCCGAc -3' miRNA: 3'- gaUGUGGUUGG---------------ACGGGUG-------GACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 22942 | 0.71 | 0.241326 |
Target: 5'- -cGCAgCGGCCUGCCaccggCACCUGGCg-- -3' miRNA: 3'- gaUGUgGUUGGACGG-----GUGGACCGgcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 988 | 0.71 | 0.241326 |
Target: 5'- cCUuCACCGucGCCcgcUGCCCGCgccaCUGGCCGGg -3' miRNA: 3'- -GAuGUGGU--UGG---ACGGGUG----GACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 38377 | 0.7 | 0.247697 |
Target: 5'- cCUGgGCCGcugGCCUGCCgcuCGCCgcGGCCGGc -3' miRNA: 3'- -GAUgUGGU---UGGACGG---GUGGa-CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 29245 | 0.7 | 0.254207 |
Target: 5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3' miRNA: 3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 40325 | 0.7 | 0.254207 |
Target: 5'- uCUAUACCGACgacacgGCgaCCACCUGGgCCGAu -3' miRNA: 3'- -GAUGUGGUUGga----CG--GGUGGACC-GGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 31436 | 0.7 | 0.267648 |
Target: 5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3' miRNA: 3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 39838 | 0.7 | 0.274581 |
Target: 5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3' miRNA: 3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 24133 | 0.7 | 0.274581 |
Target: 5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3' miRNA: 3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 19240 | 0.7 | 0.280942 |
Target: 5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3' miRNA: 3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 26257 | 0.69 | 0.288876 |
Target: 5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3' miRNA: 3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 13855 | 0.69 | 0.30375 |
Target: 5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3' miRNA: 3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 19168 | 0.69 | 0.310633 |
Target: 5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3' miRNA: 3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 1866 | 0.69 | 0.311405 |
Target: 5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3' miRNA: 3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 17784 | 0.69 | 0.311405 |
Target: 5'- -aACACCAuCCUgGCCCGCC-GGCaCGc -3' miRNA: 3'- gaUGUGGUuGGA-CGGGUGGaCCG-GCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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