Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26443 | 3' | -54 | NC_005357.1 | + | 34648 | 0.68 | 0.60528 |
Target: 5'- gGCgAAgGGUggACGCCGGcgcagaucgcGCCGGUGCu -3' miRNA: 3'- -CGaUUgCCAa-UGUGGCC----------CGGCUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 4391 | 0.66 | 0.749036 |
Target: 5'- --aGGCGccGUcGCGCCGGGCCuugagcGUGCGg -3' miRNA: 3'- cgaUUGC--CAaUGUGGCCCGGc-----UACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 41302 | 1.1 | 0.000855 |
Target: 5'- aGCUAACGGUUACACCGGGCCGAUGCGc -3' miRNA: 3'- -CGAUUGCCAAUGUGGCCCGGCUACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 14997 | 0.74 | 0.310638 |
Target: 5'- gGCcuGCGGc--CGCCGGGCgCGGUGCGc -3' miRNA: 3'- -CGauUGCCaauGUGGCCCG-GCUACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 6283 | 0.7 | 0.475044 |
Target: 5'- cGCUuuGGCuGggGCGCCGGGgcuuaucuCCGGUGCGu -3' miRNA: 3'- -CGA--UUGcCaaUGUGGCCC--------GGCUACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 6374 | 0.7 | 0.517196 |
Target: 5'- cGCUG--GGUUACACCaggucGGCCGccGCGg -3' miRNA: 3'- -CGAUugCCAAUGUGGc----CCGGCuaCGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 33153 | 0.69 | 0.527972 |
Target: 5'- cGCagcCGGUgu-ACCGGGCCGAccgcuuccUGCGg -3' miRNA: 3'- -CGauuGCCAaugUGGCCCGGCU--------ACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 36025 | 0.69 | 0.53883 |
Target: 5'- --cAugGGccgcgacUACACCGGGCCGGccggccUGCGc -3' miRNA: 3'- cgaUugCCa------AUGUGGCCCGGCU------ACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 42247 | 0.69 | 0.549764 |
Target: 5'- aGCgUGACGGUgcccagcgACACCGGGgCGcauccgccUGCGg -3' miRNA: 3'- -CG-AUUGCCAa-------UGUGGCCCgGCu-------ACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 776 | 0.66 | 0.727621 |
Target: 5'- cUUGcCGGUcAgAUCGGGCCGcUGCGc -3' miRNA: 3'- cGAUuGCCAaUgUGGCCCGGCuACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 39254 | 0.66 | 0.727621 |
Target: 5'- cGC-AGCGG--ACGCCGGGCUugccAUGCu -3' miRNA: 3'- -CGaUUGCCaaUGUGGCCCGGc---UACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 4628 | 0.67 | 0.672559 |
Target: 5'- --cGGCGGggAUGCUGGGCCacgcUGCGu -3' miRNA: 3'- cgaUUGCCaaUGUGGCCCGGcu--ACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 15970 | 0.66 | 0.738384 |
Target: 5'- aCUGACGG--AUGCCGaGGUCGA-GCGc -3' miRNA: 3'- cGAUUGCCaaUGUGGC-CCGGCUaCGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 23290 | 0.67 | 0.672559 |
Target: 5'- gGCUGACGGUgugg--GGGCCGAacacccUGCa -3' miRNA: 3'- -CGAUUGCCAauguggCCCGGCU------ACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 5932 | 0.66 | 0.716759 |
Target: 5'- cGCUGGCGGcaucccagacgUACACgGGGCCauUGUc -3' miRNA: 3'- -CGAUUGCCa----------AUGUGgCCCGGcuACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 31942 | 0.66 | 0.749036 |
Target: 5'- aGC--ACGGcccguUCGGGCCGGUGCu -3' miRNA: 3'- -CGauUGCCaauguGGCCCGGCUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 17347 | 0.67 | 0.694785 |
Target: 5'- cGCcgGGCGcGcUGCGCUGGGUggCGAUGCu -3' miRNA: 3'- -CGa-UUGC-CaAUGUGGCCCG--GCUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 12454 | 0.66 | 0.705809 |
Target: 5'- --cGACGGcUGCAuCCaGGCCGucGUGCGc -3' miRNA: 3'- cgaUUGCCaAUGU-GGcCCGGC--UACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 18001 | 0.68 | 0.60528 |
Target: 5'- cGCgcGCGGcaccgACAaaUCGGGCCGGcUGCGc -3' miRNA: 3'- -CGauUGCCaa---UGU--GGCCCGGCU-ACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 5388 | 0.68 | 0.627719 |
Target: 5'- uGCUGACGGUgcuCACgucGCCGAUGUu -3' miRNA: 3'- -CGAUUGCCAau-GUGgccCGGCUACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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