Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26443 | 5' | -55.1 | NC_005357.1 | + | 35078 | 0.67 | 0.543802 |
Target: 5'- gGCGUGGCACGagugguugaucgacGCCAAccGGCug-CUGCg -3' miRNA: 3'- gCGCGCUGUGC--------------CGGUU--CCGuuaGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 207 | 0.67 | 0.569245 |
Target: 5'- cCGgGCGACACGGCgAAcuGGCGcaccUCgGCa -3' miRNA: 3'- -GCgCGCUGUGCCGgUU--CCGUu---AGaUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 38228 | 0.67 | 0.584877 |
Target: 5'- cCGCGaCGugcuCGCGGCCAacaugcccgccaucgAGGCGGccggCUACc -3' miRNA: 3'- -GCGC-GCu---GUGCCGGU---------------UCCGUUa---GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 41495 | 0.67 | 0.547102 |
Target: 5'- aGCGUGGagaauuCGaCCAAGGCAggCUACg -3' miRNA: 3'- gCGCGCUgu----GCcGGUUCCGUuaGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 4695 | 0.67 | 0.547102 |
Target: 5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3' miRNA: 3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 7664 | 0.67 | 0.547102 |
Target: 5'- uGC-CGuACACGcGCCGuucuuuggcGGCGAUCUGCg -3' miRNA: 3'- gCGcGC-UGUGC-CGGUu--------CCGUUAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 31143 | 0.67 | 0.591603 |
Target: 5'- aGCGCGACGacGCUAAGGUAuggUUGCc -3' miRNA: 3'- gCGCGCUGUgcCGGUUCCGUua-GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 19106 | 0.66 | 0.647955 |
Target: 5'- uGCGCGGCuaccacgucauccCGGCCAgugccggccgcaaacAGGCAuUCgugGCg -3' miRNA: 3'- gCGCGCUGu------------GCCGGU---------------UCCGUuAGa--UG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 33723 | 0.66 | 0.643443 |
Target: 5'- uGCGCGACAuccgaccCGGCCAguacaccaacgccgAGGUGcgCgcgGCa -3' miRNA: 3'- gCGCGCUGU-------GCCGGU--------------UCCGUuaGa--UG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 24976 | 0.66 | 0.636672 |
Target: 5'- gGCGUGGCACcuGGCCucgaugcuGGCGGggccaCUGCu -3' miRNA: 3'- gCGCGCUGUG--CCGGuu------CCGUUa----GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 40289 | 0.66 | 0.625385 |
Target: 5'- aCG-GCGGCGCGGUUGAccGGCug-CUGCa -3' miRNA: 3'- -GCgCGCUGUGCCGGUU--CCGuuaGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 27582 | 0.66 | 0.625385 |
Target: 5'- gCGUGCGGCGCuGGCCGccaacGGCA-UCg-- -3' miRNA: 3'- -GCGCGCUGUG-CCGGUu----CCGUuAGaug -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 13001 | 0.66 | 0.625385 |
Target: 5'- gGCGCGACguGCGagcGCguGGGCAAcgcgcccaagauUCUGCu -3' miRNA: 3'- gCGCGCUG--UGC---CGguUCCGUU------------AGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 12086 | 0.66 | 0.625385 |
Target: 5'- uCGCGCGACGacaaGGCCAAagaccccgacGCGAagUACa -3' miRNA: 3'- -GCGCGCUGUg---CCGGUUc---------CGUUagAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 29698 | 0.66 | 0.614105 |
Target: 5'- gGCGCGGCACccagcaccaacgGGCC-GGGCGA-CUugaACa -3' miRNA: 3'- gCGCGCUGUG------------CCGGuUCCGUUaGA---UG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 18270 | 0.66 | 0.612977 |
Target: 5'- aGCGCGcagccgucgaggcGCugGGCCA-GGCGcgCaGCc -3' miRNA: 3'- gCGCGC-------------UGugCCGGUuCCGUuaGaUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 25796 | 0.66 | 0.625385 |
Target: 5'- gCGCGCGGCGCG-CUc-GGUaucguuGAUCUGCa -3' miRNA: 3'- -GCGCGCUGUGCcGGuuCCG------UUAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 9334 | 0.66 | 0.614105 |
Target: 5'- gGCGCGGCG-GGCgGcGGCAuccuUUUGCa -3' miRNA: 3'- gCGCGCUGUgCCGgUuCCGUu---AGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 13762 | 0.66 | 0.659222 |
Target: 5'- cCGCGCuGGCGaGGCCGccGGCAccgAUCUGg -3' miRNA: 3'- -GCGCG-CUGUgCCGGUu-CCGU---UAGAUg -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 7207 | 0.66 | 0.636672 |
Target: 5'- aGCGCGAugucCACGGCa---GC-AUCUGCg -3' miRNA: 3'- gCGCGCU----GUGCCGguucCGuUAGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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