Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26443 | 5' | -55.1 | NC_005357.1 | + | 39494 | 0.75 | 0.201593 |
Target: 5'- cCGCGCGACGCGGUguGGGCcg---GCa -3' miRNA: 3'- -GCGCGCUGUGCCGguUCCGuuagaUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 8391 | 0.72 | 0.298499 |
Target: 5'- uCGCGCuGGCugcguagccaguCGGCCAGGGCcgugcgcuuGUCUACg -3' miRNA: 3'- -GCGCG-CUGu-----------GCCGGUUCCGu--------UAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 24560 | 0.7 | 0.402793 |
Target: 5'- aGCGCGGCGauggcgaggcCGGCCAcggucGGGCcGUCcgGCg -3' miRNA: 3'- gCGCGCUGU----------GCCGGU-----UCCGuUAGa-UG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 21175 | 0.7 | 0.420991 |
Target: 5'- aGCGCGGCcugcugcGCGGCCugcuGCuGGUCUGCg -3' miRNA: 3'- gCGCGCUG-------UGCCGGuuc-CG-UUAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 25796 | 0.66 | 0.625385 |
Target: 5'- gCGCGCGGCGCG-CUc-GGUaucguuGAUCUGCa -3' miRNA: 3'- -GCGCGCUGUGCcGGuuCCG------UUAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 9334 | 0.66 | 0.614105 |
Target: 5'- gGCGCGGCG-GGCgGcGGCAuccuUUUGCa -3' miRNA: 3'- gCGCGCUGUgCCGgUuCCGUu---AGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 21574 | 0.66 | 0.602841 |
Target: 5'- uCGUGCcGCuCGGCCAcuucgguGGCGgucAUCUGCg -3' miRNA: 3'- -GCGCGcUGuGCCGGUu------CCGU---UAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 38228 | 0.67 | 0.584877 |
Target: 5'- cCGCGaCGugcuCGCGGCCAacaugcccgccaucgAGGCGGccggCUACc -3' miRNA: 3'- -GCGC-GCu---GUGCCGGU---------------UCCGUUa---GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 31143 | 0.67 | 0.591603 |
Target: 5'- aGCGCGACGacGCUAAGGUAuggUUGCc -3' miRNA: 3'- gCGCGCUGUgcCGGUUCCGUua-GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 207 | 0.67 | 0.569245 |
Target: 5'- cCGgGCGACACGGCgAAcuGGCGcaccUCgGCa -3' miRNA: 3'- -GCgCGCUGUGCCGgUU--CCGUu---AGaUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 41495 | 0.67 | 0.547102 |
Target: 5'- aGCGUGGagaauuCGaCCAAGGCAggCUACg -3' miRNA: 3'- gCGCGCUgu----GCcGGUUCCGUuaGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 4695 | 0.67 | 0.547102 |
Target: 5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3' miRNA: 3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 7664 | 0.67 | 0.547102 |
Target: 5'- uGC-CGuACACGcGCCGuucuuuggcGGCGAUCUGCg -3' miRNA: 3'- gCGcGC-UGUGC-CGGUu--------CCGUUAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 25586 | 0.68 | 0.514431 |
Target: 5'- aCGcCGCGGucUGCGGCCcAGGCAGUg-GCa -3' miRNA: 3'- -GC-GCGCU--GUGCCGGuUCCGUUAgaUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 40178 | 0.68 | 0.513355 |
Target: 5'- uGCGCGucgaacuGC-CGGCCAAGGCccggcGUUUAUa -3' miRNA: 3'- gCGCGC-------UGuGCCGGUUCCGu----UAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 22224 | 0.68 | 0.503715 |
Target: 5'- aGCGUauuGACGCGGCCcuGGUuGUCgGCc -3' miRNA: 3'- gCGCG---CUGUGCCGGuuCCGuUAGaUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 41258 | 0.68 | 0.487826 |
Target: 5'- aGCGCGAUACGGCUguccuucaccaucGAcGGCGAgcgcaaacggccgCUGCu -3' miRNA: 3'- gCGCGCUGUGCCGG-------------UU-CCGUUa------------GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 37477 | 0.69 | 0.465989 |
Target: 5'- aGCGCGAuaCGCGGCUgcaucguggcgcccgAGGGCAAgaagCUGg -3' miRNA: 3'- gCGCGCU--GUGCCGG---------------UUCCGUUa---GAUg -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 1673 | 0.69 | 0.441669 |
Target: 5'- gCGCGUGAUGCuGCCGcgcAGGUAGUCg-- -3' miRNA: 3'- -GCGCGCUGUGcCGGU---UCCGUUAGaug -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 22125 | 0.69 | 0.441669 |
Target: 5'- aGCGCGcCGCGGUCGaacAGGC--UUUGCa -3' miRNA: 3'- gCGCGCuGUGCCGGU---UCCGuuAGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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