miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 12086 0.66 0.625385
Target:  5'- uCGCGCGACGacaaGGCCAAagaccccgacGCGAagUACa -3'
miRNA:   3'- -GCGCGCUGUg---CCGGUUc---------CGUUagAUG- -5'
26443 5' -55.1 NC_005357.1 + 33723 0.66 0.643443
Target:  5'- uGCGCGACAuccgaccCGGCCAguacaccaacgccgAGGUGcgCgcgGCa -3'
miRNA:   3'- gCGCGCUGU-------GCCGGU--------------UCCGUuaGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 27582 0.66 0.625385
Target:  5'- gCGUGCGGCGCuGGCCGccaacGGCA-UCg-- -3'
miRNA:   3'- -GCGCGCUGUG-CCGGUu----CCGUuAGaug -5'
26443 5' -55.1 NC_005357.1 + 7207 0.66 0.636672
Target:  5'- aGCGCGAugucCACGGCa---GC-AUCUGCg -3'
miRNA:   3'- gCGCGCU----GUGCCGguucCGuUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 13001 0.66 0.625385
Target:  5'- gGCGCGACguGCGagcGCguGGGCAAcgcgcccaagauUCUGCu -3'
miRNA:   3'- gCGCGCUG--UGC---CGguUCCGUU------------AGAUG- -5'
26443 5' -55.1 NC_005357.1 + 40289 0.66 0.625385
Target:  5'- aCG-GCGGCGCGGUUGAccGGCug-CUGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGGUU--CCGuuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 25796 0.66 0.625385
Target:  5'- gCGCGCGGCGCG-CUc-GGUaucguuGAUCUGCa -3'
miRNA:   3'- -GCGCGCUGUGCcGGuuCCG------UUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 9334 0.66 0.614105
Target:  5'- gGCGCGGCG-GGCgGcGGCAuccuUUUGCa -3'
miRNA:   3'- gCGCGCUGUgCCGgUuCCGUu---AGAUG- -5'
26443 5' -55.1 NC_005357.1 + 21574 0.66 0.602841
Target:  5'- uCGUGCcGCuCGGCCAcuucgguGGCGgucAUCUGCg -3'
miRNA:   3'- -GCGCGcUGuGCCGGUu------CCGU---UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 29698 0.66 0.614105
Target:  5'- gGCGCGGCACccagcaccaacgGGCC-GGGCGA-CUugaACa -3'
miRNA:   3'- gCGCGCUGUG------------CCGGuUCCGUUaGA---UG- -5'
26443 5' -55.1 NC_005357.1 + 18270 0.66 0.612977
Target:  5'- aGCGCGcagccgucgaggcGCugGGCCA-GGCGcgCaGCc -3'
miRNA:   3'- gCGCGC-------------UGugCCGGUuCCGUuaGaUG- -5'
26443 5' -55.1 NC_005357.1 + 19106 0.66 0.647955
Target:  5'- uGCGCGGCuaccacgucauccCGGCCAgugccggccgcaaacAGGCAuUCgugGCg -3'
miRNA:   3'- gCGCGCUGu------------GCCGGU---------------UCCGUuAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 24976 0.66 0.636672
Target:  5'- gGCGUGGCACcuGGCCucgaugcuGGCGGggccaCUGCu -3'
miRNA:   3'- gCGCGCUGUG--CCGGuu------CCGUUa----GAUG- -5'
26443 5' -55.1 NC_005357.1 + 13762 0.66 0.659222
Target:  5'- cCGCGCuGGCGaGGCCGccGGCAccgAUCUGg -3'
miRNA:   3'- -GCGCG-CUGUgCCGGUu-CCGU---UAGAUg -5'
26443 5' -55.1 NC_005357.1 + 32022 0.66 0.659222
Target:  5'- --aGUGGCGaGGCCAucGGCGcgCUGCa -3'
miRNA:   3'- gcgCGCUGUgCCGGUu-CCGUuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 207 0.67 0.569245
Target:  5'- cCGgGCGACACGGCgAAcuGGCGcaccUCgGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGgUU--CCGUu---AGaUG- -5'
26443 5' -55.1 NC_005357.1 + 4695 0.67 0.547102
Target:  5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3'
miRNA:   3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5'
26443 5' -55.1 NC_005357.1 + 34472 0.67 0.580401
Target:  5'- uGCGCGcCGaGGCCAcGGGCAAgCUGu -3'
miRNA:   3'- gCGCGCuGUgCCGGU-UCCGUUaGAUg -5'
26443 5' -55.1 NC_005357.1 + 35078 0.67 0.543802
Target:  5'- gGCGUGGCACGagugguugaucgacGCCAAccGGCug-CUGCg -3'
miRNA:   3'- gCGCGCUGUGC--------------CGGUU--CCGuuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 41495 0.67 0.547102
Target:  5'- aGCGUGGagaauuCGaCCAAGGCAggCUACg -3'
miRNA:   3'- gCGCGCUgu----GCcGGUUCCGUuaGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.