miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 207 0.67 0.569245
Target:  5'- cCGgGCGACACGGCgAAcuGGCGcaccUCgGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGgUU--CCGUu---AGaUG- -5'
26443 5' -55.1 NC_005357.1 + 1673 0.69 0.441669
Target:  5'- gCGCGUGAUGCuGCCGcgcAGGUAGUCg-- -3'
miRNA:   3'- -GCGCGCUGUGcCGGU---UCCGUUAGaug -5'
26443 5' -55.1 NC_005357.1 + 2565 0.72 0.300028
Target:  5'- uGUGCGACACGGCCcAGcGCG---UGCg -3'
miRNA:   3'- gCGCGCUGUGCCGGuUC-CGUuagAUG- -5'
26443 5' -55.1 NC_005357.1 + 4695 0.67 0.547102
Target:  5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3'
miRNA:   3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5'
26443 5' -55.1 NC_005357.1 + 5432 0.68 0.536131
Target:  5'- gGCGCGGaugGCGGCguGGGCGagGUCg-- -3'
miRNA:   3'- gCGCGCUg--UGCCGguUCCGU--UAGaug -5'
26443 5' -55.1 NC_005357.1 + 5627 0.7 0.40944
Target:  5'- gCGCGUGGCGCGGCgCAgcuugcugguggcuGGacGCGGUUUGCa -3'
miRNA:   3'- -GCGCGCUGUGCCG-GU--------------UC--CGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 7207 0.66 0.636672
Target:  5'- aGCGCGAugucCACGGCa---GC-AUCUGCg -3'
miRNA:   3'- gCGCGCU----GUGCCGguucCGuUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 7664 0.67 0.547102
Target:  5'- uGC-CGuACACGcGCCGuucuuuggcGGCGAUCUGCg -3'
miRNA:   3'- gCGcGC-UGUGC-CGGUu--------CCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 7816 0.7 0.384186
Target:  5'- uCGC-UGAUAUGGUCGAGGCGcggCUGCa -3'
miRNA:   3'- -GCGcGCUGUGCCGGUUCCGUua-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 8391 0.72 0.298499
Target:  5'- uCGCGCuGGCugcguagccaguCGGCCAGGGCcgugcgcuuGUCUACg -3'
miRNA:   3'- -GCGCG-CUGu-----------GCCGGUUCCGu--------UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 8450 0.7 0.402793
Target:  5'- gGCGCGAUGuCGGCguCGAGGUGGcCUGCg -3'
miRNA:   3'- gCGCGCUGU-GCCG--GUUCCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 8580 0.68 0.503715
Target:  5'- gGCGCGACacgACGGUCAcGGCGAc---- -3'
miRNA:   3'- gCGCGCUG---UGCCGGUuCCGUUagaug -5'
26443 5' -55.1 NC_005357.1 + 9334 0.66 0.614105
Target:  5'- gGCGCGGCG-GGCgGcGGCAuccuUUUGCa -3'
miRNA:   3'- gCGCGCUGUgCCGgUuCCGUu---AGAUG- -5'
26443 5' -55.1 NC_005357.1 + 9534 0.74 0.237111
Target:  5'- uGCuGCGGCccuguuCGGCCAGuGCGAUCUGCu -3'
miRNA:   3'- gCG-CGCUGu-----GCCGGUUcCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 9578 0.67 0.580401
Target:  5'- gGCGcCGACcgucuGCGGCCA-GGCGAagccgUUGCg -3'
miRNA:   3'- gCGC-GCUG-----UGCCGGUuCCGUUa----GAUG- -5'
26443 5' -55.1 NC_005357.1 + 10312 0.67 0.568132
Target:  5'- gGCGUcgaggucGGCAgCGGCCAGGGCGuUgaGCa -3'
miRNA:   3'- gCGCG-------CUGU-GCCGGUUCCGUuAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 10701 0.7 0.384186
Target:  5'- aGCGCG-CACGGCCucGGCcgaUUGCu -3'
miRNA:   3'- gCGCGCuGUGCCGGuuCCGuuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 10723 0.75 0.207174
Target:  5'- gCGCGCGGCGggcUGGUC-AGGCGGUgCUGCa -3'
miRNA:   3'- -GCGCGCUGU---GCCGGuUCCGUUA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 12086 0.66 0.625385
Target:  5'- uCGCGCGACGacaaGGCCAAagaccccgacGCGAagUACa -3'
miRNA:   3'- -GCGCGCUGUg---CCGGUUc---------CGUUagAUG- -5'
26443 5' -55.1 NC_005357.1 + 12671 0.7 0.384186
Target:  5'- aCGCGCcuGGCAgCaGCCGAGGCcgaguUCUACg -3'
miRNA:   3'- -GCGCG--CUGU-GcCGGUUCCGuu---AGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.