miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 37477 0.69 0.465989
Target:  5'- aGCGCGAuaCGCGGCUgcaucguggcgcccgAGGGCAAgaagCUGg -3'
miRNA:   3'- gCGCGCU--GUGCCGG---------------UUCCGUUa---GAUg -5'
26443 5' -55.1 NC_005357.1 + 27251 0.71 0.366158
Target:  5'- gGCGCcccaGGCucuUGGCCGAGGCAAUgaACc -3'
miRNA:   3'- gCGCG----CUGu--GCCGGUUCCGUUAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 10701 0.7 0.384186
Target:  5'- aGCGCG-CACGGCCucGGCcgaUUGCu -3'
miRNA:   3'- gCGCGCuGUGCCGGuuCCGuuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 32925 0.7 0.384186
Target:  5'- uGCaCGGCugcuguuCGGCCAGGGCGAccacggCUGCg -3'
miRNA:   3'- gCGcGCUGu------GCCGGUUCCGUUa-----GAUG- -5'
26443 5' -55.1 NC_005357.1 + 31629 0.7 0.402793
Target:  5'- aGCGUGGCAgGGCCucAAGGCA---UACc -3'
miRNA:   3'- gCGCGCUGUgCCGG--UUCCGUuagAUG- -5'
26443 5' -55.1 NC_005357.1 + 24560 0.7 0.402793
Target:  5'- aGCGCGGCGauggcgaggcCGGCCAcggucGGGCcGUCcgGCg -3'
miRNA:   3'- gCGCGCUGU----------GCCGGU-----UCCGuUAGa-UG- -5'
26443 5' -55.1 NC_005357.1 + 21175 0.7 0.420991
Target:  5'- aGCGCGGCcugcugcGCGGCCugcuGCuGGUCUGCg -3'
miRNA:   3'- gCGCGCUG-------UGCCGGuuc-CG-UUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 22125 0.69 0.441669
Target:  5'- aGCGCGcCGCGGUCGaacAGGC--UUUGCa -3'
miRNA:   3'- gCGCGCuGUGCCGGU---UCCGuuAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 1673 0.69 0.441669
Target:  5'- gCGCGUGAUGCuGCCGcgcAGGUAGUCg-- -3'
miRNA:   3'- -GCGCGCUGUGcCGGU---UCCGUUAGaug -5'
26443 5' -55.1 NC_005357.1 + 20783 0.72 0.307765
Target:  5'- uCGCGCGgcuGCACGuCCAugucGGUGAUCUGCa -3'
miRNA:   3'- -GCGCGC---UGUGCcGGUu---CCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 8391 0.72 0.298499
Target:  5'- uCGCGCuGGCugcguagccaguCGGCCAGGGCcgugcgcuuGUCUACg -3'
miRNA:   3'- -GCGCG-CUGu-----------GCCGGUUCCGu--------UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 33480 0.73 0.2636
Target:  5'- -uCGCGGCACGGCCAccgcuGGCgAAUCcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCG-UUAGa-UG- -5'
26443 5' -55.1 NC_005357.1 + 39494 0.75 0.201593
Target:  5'- cCGCGCGACGCGGUguGGGCcg---GCa -3'
miRNA:   3'- -GCGCGCUGUGCCGguUCCGuuagaUG- -5'
26443 5' -55.1 NC_005357.1 + 16403 0.74 0.224722
Target:  5'- gGCGUugcucgaaguagGACACGGCCGcgGGGUAAUCgccgGCg -3'
miRNA:   3'- gCGCG------------CUGUGCCGGU--UCCGUUAGa---UG- -5'
26443 5' -55.1 NC_005357.1 + 9534 0.74 0.237111
Target:  5'- uGCuGCGGCccuguuCGGCCAGuGCGAUCUGCu -3'
miRNA:   3'- gCG-CGCUGu-----GCCGGUUcCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 33216 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33264 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33312 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33360 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33408 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.