Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26444 | 3' | -57.8 | NC_005357.1 | + | 19616 | 0.69 | 0.330265 |
Target: 5'- uGCCGUccggggUCaugcgGGCCGCgaCAUCGGCCAg -3' miRNA: 3'- -UGGCGaa----AG-----CUGGCGgaGUAGCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 19829 | 0.66 | 0.51856 |
Target: 5'- --aGUgaa-GACCGCCUCGU-GGCCGg -3' miRNA: 3'- uggCGaaagCUGGCGGAGUAgCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 21577 | 0.66 | 0.497598 |
Target: 5'- uGCCGC--UCGGCCaCUUCGguggCGGUCAu -3' miRNA: 3'- -UGGCGaaAGCUGGcGGAGUa---GCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 22983 | 0.71 | 0.243882 |
Target: 5'- aGCCGgUcggaUUCGGCuuuCGCCUgGUCGGCCu -3' miRNA: 3'- -UGGCgA----AAGCUG---GCGGAgUAGCCGGu -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 23174 | 0.66 | 0.508033 |
Target: 5'- uACCGCUgUCGccgugggcGCCGCCguuggCGUCGGg-- -3' miRNA: 3'- -UGGCGAaAGC--------UGGCGGa----GUAGCCggu -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 23338 | 0.71 | 0.2503 |
Target: 5'- aGCCGCgcaaUUCGACgGCCUCG-CcGCCGa -3' miRNA: 3'- -UGGCGa---AAGCUGgCGGAGUaGcCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 23541 | 0.66 | 0.51856 |
Target: 5'- cGCaCGCggUCGAUgGCC---UCGGCCGa -3' miRNA: 3'- -UG-GCGaaAGCUGgCGGaguAGCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 28082 | 0.71 | 0.237601 |
Target: 5'- cGCCGacaugaUCGGCuucuuccagCGCCUCAUCGGCUAc -3' miRNA: 3'- -UGGCgaa---AGCUG---------GCGGAGUAGCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 28558 | 0.68 | 0.390231 |
Target: 5'- gGCCGCcggccaucgCGGCgCGCa-CGUCGGCCAc -3' miRNA: 3'- -UGGCGaaa------GCUG-GCGgaGUAGCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 29559 | 0.66 | 0.466897 |
Target: 5'- cGCCGUgcUCGGgguaUCGCgUCAggUCGGCCGc -3' miRNA: 3'- -UGGCGaaAGCU----GGCGgAGU--AGCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 31091 | 0.67 | 0.437203 |
Target: 5'- cCCGCg--CGAUUGCCUCGgcCGGCa- -3' miRNA: 3'- uGGCGaaaGCUGGCGGAGUa-GCCGgu -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 32358 | 0.67 | 0.427548 |
Target: 5'- cGCUGCggUCG-CCGCCgaggCccCGGCCGc -3' miRNA: 3'- -UGGCGaaAGCuGGCGGa---GuaGCCGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 32437 | 0.66 | 0.497598 |
Target: 5'- cCUGCUgggCGGCCgggGCCUCggCGGCg- -3' miRNA: 3'- uGGCGAaa-GCUGG---CGGAGuaGCCGgu -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 33051 | 0.71 | 0.237601 |
Target: 5'- cCCGCgugcugUCGugCGCUUCAUCGGgUCGc -3' miRNA: 3'- uGGCGaa----AGCugGCGGAGUAGCC-GGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 33893 | 0.66 | 0.51856 |
Target: 5'- cGCgGCUgUCGAgCGUUUCAUCGccuacGCCAc -3' miRNA: 3'- -UGgCGAaAGCUgGCGGAGUAGC-----CGGU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 34269 | 0.68 | 0.390231 |
Target: 5'- uUCGUgcgCGGCCGugcCCUCGUCGGCgAa -3' miRNA: 3'- uGGCGaaaGCUGGC---GGAGUAGCCGgU- -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 34707 | 0.69 | 0.338402 |
Target: 5'- gGCCGCcgagCGugCGCUgcaguUCAUCGGCa- -3' miRNA: 3'- -UGGCGaaa-GCugGCGG-----AGUAGCCGgu -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 35369 | 0.66 | 0.477025 |
Target: 5'- cCCGCUcaCGuCCGCgaagUCGUCGGCUg -3' miRNA: 3'- uGGCGAaaGCuGGCGg---AGUAGCCGGu -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 36047 | 0.67 | 0.415188 |
Target: 5'- cGCCGCgg-CGGCCGaCCUgGUguaacccagcgcccCGGCCu -3' miRNA: 3'- -UGGCGaaaGCUGGC-GGAgUA--------------GCCGGu -5' |
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26444 | 3' | -57.8 | NC_005357.1 | + | 36809 | 0.7 | 0.29176 |
Target: 5'- aGCUGCUUgcCGGCCuuguccuugGCCUUGUCGGUCGg -3' miRNA: 3'- -UGGCGAAa-GCUGG---------CGGAGUAGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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