miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 5' -58.6 NC_005357.1 + 41133 0.67 0.325022
Target:  5'- cGCCcuggGCGCGGCGGUGUgGgCGgGCAu- -3'
miRNA:   3'- -UGGa---CGCGCCGUCGUAgU-GCgCGUuu -5'
26445 5' -58.6 NC_005357.1 + 40611 0.69 0.271956
Target:  5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3'
miRNA:   3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 39653 0.66 0.410605
Target:  5'- cACCUGCGCaacgucgaggugucGGCAGUGgucggCACGCcCGAGc -3'
miRNA:   3'- -UGGACGCG--------------CCGUCGUa----GUGCGcGUUU- -5'
26445 5' -58.6 NC_005357.1 + 37294 0.72 0.162744
Target:  5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3'
miRNA:   3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 36917 0.67 0.358643
Target:  5'- gGCCgGCGUgccuacgacuuuGGCAGCAUCGC-CGUAc- -3'
miRNA:   3'- -UGGaCGCG------------CCGUCGUAGUGcGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 36152 0.67 0.358643
Target:  5'- gACCUGUuCGGCcuGCccaGCGCGCAGAu -3'
miRNA:   3'- -UGGACGcGCCGu-CGuagUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 35990 0.67 0.350014
Target:  5'- cGCCUucgcGgGCGGUGGUGUCGCGaGCGAGg -3'
miRNA:   3'- -UGGA----CgCGCCGUCGUAGUGCgCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 35955 0.79 0.050988
Target:  5'- gGCCUGCGCGGCGuGCAguUCcUGCGCGAc -3'
miRNA:   3'- -UGGACGCGCCGU-CGU--AGuGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 35794 0.7 0.232207
Target:  5'- aACCUGUacguguccGCGcGCAGCGcCACGCGCc-- -3'
miRNA:   3'- -UGGACG--------CGC-CGUCGUaGUGCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 35685 0.67 0.358643
Target:  5'- gACCUuuccgcuauugaGCGCGGCGGCccaGCGCaGCGGc -3'
miRNA:   3'- -UGGA------------CGCGCCGUCGuagUGCG-CGUUu -5'
26445 5' -58.6 NC_005357.1 + 35396 0.66 0.385411
Target:  5'- cGCCUGCuGCaacaGGCGGCAcaaacgcccaUCACGCGa--- -3'
miRNA:   3'- -UGGACG-CG----CCGUCGU----------AGUGCGCguuu -5'
26445 5' -58.6 NC_005357.1 + 35183 0.71 0.190561
Target:  5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3'
miRNA:   3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 34067 0.66 0.388159
Target:  5'- uCgaGCGCGGCggcgcaggagguacuGGCAUgagcacgCACGCGCAAc -3'
miRNA:   3'- uGgaCGCGCCG---------------UCGUA-------GUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 33754 0.66 0.423095
Target:  5'- cGCCgagGUGCGcGCGGCAcgCAaugccgacCGCGCGAu -3'
miRNA:   3'- -UGGa--CGCGC-CGUCGUa-GU--------GCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 33738 0.69 0.271251
Target:  5'- aAUCUGCGCGGC-GCA-CACcugggcgGCGCAGc -3'
miRNA:   3'- -UGGACGCGCCGuCGUaGUG-------CGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 30283 0.67 0.362135
Target:  5'- cGCCUacgcggaagcgcagcGCGUGGC-GCGUCGCGC-CAAc -3'
miRNA:   3'- -UGGA---------------CGCGCCGuCGUAGUGCGcGUUu -5'
26445 5' -58.6 NC_005357.1 + 29817 0.71 0.192135
Target:  5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3'
miRNA:   3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 28620 0.66 0.394622
Target:  5'- aACCggGCGCGGaugaggccggcCAGUucCGCGCGCAGu -3'
miRNA:   3'- -UGGa-CGCGCC-----------GUCGuaGUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 27800 0.68 0.286371
Target:  5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3'
miRNA:   3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 26837 0.67 0.325022
Target:  5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3'
miRNA:   3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.