Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26445 | 5' | -58.6 | NC_005357.1 | + | 1737 | 1.05 | 0.000488 |
Target: 5'- uACCUGCGCGGCAGCAUCACGCGCAAAc -3' miRNA: 3'- -UGGACGCGCCGUCGUAGUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 36152 | 0.67 | 0.358643 |
Target: 5'- gACCUGUuCGGCcuGCccaGCGCGCAGAu -3' miRNA: 3'- -UGGACGcGCCGu-CGuagUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 30283 | 0.67 | 0.362135 |
Target: 5'- cGCCUacgcggaagcgcagcGCGUGGC-GCGUCGCGC-CAAc -3' miRNA: 3'- -UGGA---------------CGCGCCGuCGUAGUGCGcGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 33754 | 0.66 | 0.423095 |
Target: 5'- cGCCgagGUGCGcGCGGCAcgCAaugccgacCGCGCGAu -3' miRNA: 3'- -UGGa--CGCGC-CGUCGUa-GU--------GCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 29817 | 0.71 | 0.192135 |
Target: 5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3' miRNA: 3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14590 | 0.7 | 0.202371 |
Target: 5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3' miRNA: 3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8559 | 0.7 | 0.226079 |
Target: 5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3' miRNA: 3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 40611 | 0.69 | 0.271956 |
Target: 5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3' miRNA: 3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14854 | 0.68 | 0.293801 |
Target: 5'- cGCCUGCuGCcGguGCccuUUACGCGCAAc -3' miRNA: 3'- -UGGACG-CGcCguCGu--AGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 35685 | 0.67 | 0.358643 |
Target: 5'- gACCUuuccgcuauugaGCGCGGCGGCccaGCGCaGCGGc -3' miRNA: 3'- -UGGA------------CGCGCCGUCGuagUGCG-CGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26837 | 0.67 | 0.325022 |
Target: 5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3' miRNA: 3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 12065 | 0.68 | 0.286371 |
Target: 5'- cCCUacaGCaGCGGCGGguUCuCGCGCGAc -3' miRNA: 3'- uGGA---CG-CGCCGUCguAGuGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8258 | 0.74 | 0.109043 |
Target: 5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3' miRNA: 3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 41133 | 0.67 | 0.325022 |
Target: 5'- cGCCcuggGCGCGGCGGUGUgGgCGgGCAu- -3' miRNA: 3'- -UGGa---CGCGCCGUCGUAgU-GCgCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26366 | 0.73 | 0.137462 |
Target: 5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3' miRNA: 3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 5533 | 0.68 | 0.286371 |
Target: 5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3' miRNA: 3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 1767 | 0.67 | 0.350014 |
Target: 5'- gGCCUGCGCcuGGC-GCGUCGgGC-CGAu -3' miRNA: 3'- -UGGACGCG--CCGuCGUAGUgCGcGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 36917 | 0.67 | 0.358643 |
Target: 5'- gGCCgGCGUgccuacgacuuuGGCAGCAUCGC-CGUAc- -3' miRNA: 3'- -UGGaCGCG------------CCGUCGUAGUGcGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 35183 | 0.71 | 0.190561 |
Target: 5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3' miRNA: 3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 20007 | 0.7 | 0.214232 |
Target: 5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3' miRNA: 3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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