Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26445 | 5' | -58.6 | NC_005357.1 | + | 11492 | 0.66 | 0.394622 |
Target: 5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3' miRNA: 3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 12065 | 0.68 | 0.286371 |
Target: 5'- cCCUacaGCaGCGGCGGguUCuCGCGCGAc -3' miRNA: 3'- uGGA---CG-CGCCGUCguAGuGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 13448 | 0.66 | 0.413467 |
Target: 5'- cGCCaGCuuGGCGGCcUCGgGCGCGGu -3' miRNA: 3'- -UGGaCGcgCCGUCGuAGUgCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14231 | 0.69 | 0.25813 |
Target: 5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3' miRNA: 3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14590 | 0.7 | 0.202371 |
Target: 5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3' miRNA: 3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14632 | 0.68 | 0.301381 |
Target: 5'- gACgUGCuGCGGCuGCGcggCGCGCGCu-- -3' miRNA: 3'- -UGgACG-CGCCGuCGUa--GUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14725 | 0.69 | 0.238475 |
Target: 5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3' miRNA: 3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14854 | 0.68 | 0.293801 |
Target: 5'- cGCCUGCuGCcGguGCccuUUACGCGCAAc -3' miRNA: 3'- -UGGACG-CGcCguCGu--AGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 15007 | 0.67 | 0.367419 |
Target: 5'- cGCCggGCGCGGUGcGCcagGCGCGCGAc -3' miRNA: 3'- -UGGa-CGCGCCGU-CGuagUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 16128 | 0.66 | 0.376343 |
Target: 5'- uGCCUGUccGUugauGGCAucCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACG--CG----CCGUc-GUAGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 17368 | 0.68 | 0.27909 |
Target: 5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3' miRNA: 3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 17754 | 0.66 | 0.403975 |
Target: 5'- aACCccagGUGUGcaguucgaGCAGCgaGUCGCGCGCGAAc -3' miRNA: 3'- -UGGa---CGCGC--------CGUCG--UAGUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 20007 | 0.7 | 0.214232 |
Target: 5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3' miRNA: 3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 22617 | 0.66 | 0.375443 |
Target: 5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3' miRNA: 3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 25768 | 0.67 | 0.325022 |
Target: 5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3' miRNA: 3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26046 | 0.68 | 0.309111 |
Target: 5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3' miRNA: 3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26117 | 0.66 | 0.417302 |
Target: 5'- cGCCaUGCcggcauguguucgucGCGGCAG-AUUugGCGCAGc -3' miRNA: 3'- -UGG-ACG---------------CGCCGUCgUAGugCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26273 | 0.76 | 0.086709 |
Target: 5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26366 | 0.73 | 0.137462 |
Target: 5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3' miRNA: 3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26837 | 0.67 | 0.325022 |
Target: 5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3' miRNA: 3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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