Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26446 | 3' | -57.7 | NC_005357.1 | + | 31892 | 0.67 | 0.458082 |
Target: 5'- cGUUGCGCGUGGcgGCggaaagcgUGgCCGGCGGu- -3' miRNA: 3'- -CGACGCGCACCa-CG--------AUgGGCUGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 14642 | 0.68 | 0.438604 |
Target: 5'- gGCUGCGCGgcgcgcgcuucgUGuacGUGUccgaGCCgGACGAGGg -3' miRNA: 3'- -CGACGCGC------------AC---CACGa---UGGgCUGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 12219 | 0.68 | 0.438604 |
Target: 5'- --aGUGCGUGcgcGUGCUcaaGCCCGGCGGc- -3' miRNA: 3'- cgaCGCGCAC---CACGA---UGGGCUGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 14083 | 0.7 | 0.340654 |
Target: 5'- --cGCGC-----GCUGCCCGACGAGGc -3' miRNA: 3'- cgaCGCGcaccaCGAUGGGCUGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 27693 | 0.78 | 0.089846 |
Target: 5'- uGCUGCGCGUacugccuGGgGCUACCgGGCGcAGGg -3' miRNA: 3'- -CGACGCGCA-------CCaCGAUGGgCUGC-UCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 17356 | 0.79 | 0.080431 |
Target: 5'- cGCUGCGCuggGUGGcgaUGCUGCCCGAUGGu- -3' miRNA: 3'- -CGACGCG---CACC---ACGAUGGGCUGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 40211 | 1.12 | 0.000265 |
Target: 5'- uGCUGCGCGUGGUGCUACCCGACGAGGg -3' miRNA: 3'- -CGACGCGCACCACGAUGGGCUGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 11921 | 0.66 | 0.561483 |
Target: 5'- aGCUGCGCcaccucGUGCUcaACCuCGACGAc- -3' miRNA: 3'- -CGACGCGcac---CACGA--UGG-GCUGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 12549 | 0.66 | 0.561483 |
Target: 5'- uGCcgggGgGgGUGGUGCUagACCCGuuCGcAGGa -3' miRNA: 3'- -CGa---CgCgCACCACGA--UGGGCu-GC-UCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 16683 | 0.66 | 0.540145 |
Target: 5'- aGCaGCGCGcccaGcGUGCUGCCgcCGGUGAGGa -3' miRNA: 3'- -CGaCGCGCa---C-CACGAUGG--GCUGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 29769 | 0.67 | 0.478012 |
Target: 5'- cCUGCGCaugaUGG-GCgacgACCCGACGccaaAGGa -3' miRNA: 3'- cGACGCGc---ACCaCGa---UGGGCUGC----UCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 19908 | 0.67 | 0.478012 |
Target: 5'- cGCUGCGCGUGcucGCUGCggggaUGAUGGcGGg -3' miRNA: 3'- -CGACGCGCACca-CGAUGg----GCUGCU-CC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 31845 | 0.66 | 0.550782 |
Target: 5'- gGCUGCGCGccugGGUaCUACgCC--CGAGGc -3' miRNA: 3'- -CGACGCGCa---CCAcGAUG-GGcuGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 6622 | 0.67 | 0.448284 |
Target: 5'- aGCggGCGCGUGGcGCUGCgCG-CGGa- -3' miRNA: 3'- -CGa-CGCGCACCaCGAUGgGCuGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 35337 | 0.66 | 0.529577 |
Target: 5'- -gUGCGCGUGG-GC-GCgCCGugGguAGGc -3' miRNA: 3'- cgACGCGCACCaCGaUG-GGCugC--UCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 1670 | 0.68 | 0.438604 |
Target: 5'- uUUGCGCGUGaUGCUGCC--GCGcAGGu -3' miRNA: 3'- cGACGCGCACcACGAUGGgcUGC-UCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 1708 | 0.66 | 0.561483 |
Target: 5'- --cGC-CGUGGgccgGCgugCCGGCGAGGg -3' miRNA: 3'- cgaCGcGCACCa---CGaugGGCUGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 31304 | 0.66 | 0.561483 |
Target: 5'- gGCgacCGCGUGGUG--GCCCGGCu-GGa -3' miRNA: 3'- -CGac-GCGCACCACgaUGGGCUGcuCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 4811 | 0.66 | 0.550782 |
Target: 5'- cGCUGCGgGau-UGCUGgCCGGCGAcaGGu -3' miRNA: 3'- -CGACGCgCaccACGAUgGGCUGCU--CC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 12523 | 0.71 | 0.273024 |
Target: 5'- --aGCGCGUcgaGGUGCUGCUCGACcucGGc -3' miRNA: 3'- cgaCGCGCA---CCACGAUGGGCUGcu-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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