Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 5' | -51.6 | NC_005357.1 | + | 41511 | 0.67 | 0.813377 |
Target: 5'- -cCAAGGCaGGC---UACGAaaGCGCGGu -3' miRNA: 3'- gaGUUUCGgCCGuuaAUGCU--CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 34043 | 0.69 | 0.684875 |
Target: 5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3' miRNA: 3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 21808 | 0.68 | 0.751497 |
Target: 5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3' miRNA: 3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 8124 | 0.68 | 0.762215 |
Target: 5'- -gCGcGGCCGGCGuugGUUGUGGGCguGCGGg -3' miRNA: 3'- gaGUuUCGGCCGU---UAAUGCUCG--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 40196 | 0.67 | 0.783202 |
Target: 5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3' miRNA: 3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20309 | 0.67 | 0.793447 |
Target: 5'- gCUCGGcGGCCGGU---UGCGA-UGCGGg -3' miRNA: 3'- -GAGUU-UCGGCCGuuaAUGCUcGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 35176 | 0.67 | 0.793447 |
Target: 5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3' miRNA: 3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 29256 | 0.67 | 0.803509 |
Target: 5'- aCUCAuaAGGCCGGCcggUGuCGGG-GUGGa -3' miRNA: 3'- -GAGU--UUCGGCCGuuaAU-GCUCgCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 9726 | 0.67 | 0.812399 |
Target: 5'- cCUCGAAGCCgcgGGCGAacUGCucgugguGGGCGCGc -3' miRNA: 3'- -GAGUUUCGG---CCGUUa-AUG-------CUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 38036 | 0.69 | 0.684875 |
Target: 5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3' miRNA: 3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 9846 | 0.7 | 0.639192 |
Target: 5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3' miRNA: 3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 10937 | 0.7 | 0.627724 |
Target: 5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3' miRNA: 3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 31098 | 0.82 | 0.129459 |
Target: 5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3' miRNA: 3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 17288 | 0.81 | 0.162981 |
Target: 5'- -aCGAAGCCGGCGcc-GCGGGCGCGc -3' miRNA: 3'- gaGUUUCGGCCGUuaaUGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 26041 | 0.75 | 0.355545 |
Target: 5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3' miRNA: 3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 23500 | 0.72 | 0.482572 |
Target: 5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3' miRNA: 3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 14189 | 0.71 | 0.548149 |
Target: 5'- -gCGAAGCCGGUguccuugucauaGGUcagGCGcAGCGCGGc -3' miRNA: 3'- gaGUUUCGGCCG------------UUAa--UGC-UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 28664 | 0.71 | 0.548149 |
Target: 5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3' miRNA: 3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 1706 | 0.71 | 0.582003 |
Target: 5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3' miRNA: 3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 30412 | 0.7 | 0.59339 |
Target: 5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3' miRNA: 3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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