Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 5' | -51.6 | NC_005357.1 | + | 32133 | 0.67 | 0.800511 |
Target: 5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3' miRNA: 3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 35176 | 0.67 | 0.793447 |
Target: 5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3' miRNA: 3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20309 | 0.67 | 0.793447 |
Target: 5'- gCUCGGcGGCCGGU---UGCGA-UGCGGg -3' miRNA: 3'- -GAGUU-UCGGCCGuuaAUGCUcGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 4857 | 0.67 | 0.793447 |
Target: 5'- -gCAGcgccAGCCGGCGugcuggGCGcAGUGUGGg -3' miRNA: 3'- gaGUU----UCGGCCGUuaa---UGC-UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 37182 | 0.67 | 0.783202 |
Target: 5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3' miRNA: 3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 12993 | 0.67 | 0.783202 |
Target: 5'- --aGAAGCUGacuaGC-GUUAUGGGCGCGGc -3' miRNA: 3'- gagUUUCGGC----CGuUAAUGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 40196 | 0.67 | 0.783202 |
Target: 5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3' miRNA: 3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 30192 | 0.67 | 0.772787 |
Target: 5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3' miRNA: 3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 882 | 0.67 | 0.772787 |
Target: 5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3' miRNA: 3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 8124 | 0.68 | 0.762215 |
Target: 5'- -gCGcGGCCGGCGuugGUUGUGGGCguGCGGg -3' miRNA: 3'- gaGUuUCGGCCGU---UAAUGCUCG--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 22322 | 0.68 | 0.762215 |
Target: 5'- gCUgAcGGCCGGCGAaUACGccauCGCGGc -3' miRNA: 3'- -GAgUuUCGGCCGUUaAUGCuc--GCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 15179 | 0.68 | 0.762215 |
Target: 5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3' miRNA: 3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 21808 | 0.68 | 0.751497 |
Target: 5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3' miRNA: 3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 27941 | 0.68 | 0.751497 |
Target: 5'- ---cGAGCaCGcCAAgaugGCGAGCGCGGa -3' miRNA: 3'- gaguUUCG-GCcGUUaa--UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 17672 | 0.68 | 0.751497 |
Target: 5'- aUCGAGGCCGGUAu---CGAcaacGCGCa- -3' miRNA: 3'- gAGUUUCGGCCGUuaauGCU----CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20280 | 0.68 | 0.751497 |
Target: 5'- -cCAAcAGCCGGCc---GCGGGCGCu- -3' miRNA: 3'- gaGUU-UCGGCCGuuaaUGCUCGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 21231 | 0.68 | 0.729679 |
Target: 5'- -gCAgcAGGCCGcGCuGUUGaaccaGGGCGCGGa -3' miRNA: 3'- gaGU--UUCGGC-CGuUAAUg----CUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 7704 | 0.68 | 0.718604 |
Target: 5'- --aGGAGCCGGCGuggguCGAGcCGCGc -3' miRNA: 3'- gagUUUCGGCCGUuaau-GCUC-GCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 32179 | 0.68 | 0.707437 |
Target: 5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3' miRNA: 3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 19818 | 0.68 | 0.705194 |
Target: 5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3' miRNA: 3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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