Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26448 | 3' | -51 | NC_005357.1 | + | 805 | 0.67 | 0.828162 |
Target: 5'- cGGCGaCGCGccgcgcccagcccuuGCCgaaCGUCGGCCAGGUg -3' miRNA: 3'- -CUGUaGCGU---------------UGGa--GUAGCUGGUCUAg -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 1175 | 0.66 | 0.861003 |
Target: 5'- cACAuagucUCGCcGCCgggGUCGGCCGGGUUg -3' miRNA: 3'- cUGU-----AGCGuUGGag-UAGCUGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 1297 | 0.71 | 0.545941 |
Target: 5'- cGACAcCGCuuucgaccGCCUCAUCGGCCAuGAg- -3' miRNA: 3'- -CUGUaGCGu-------UGGAGUAGCUGGU-CUag -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 2772 | 1.11 | 0.001295 |
Target: 5'- cGACAUCGCAACCUCAUCGACCAGAUCa -3' miRNA: 3'- -CUGUAGCGUUGGAGUAGCUGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 4891 | 0.66 | 0.861003 |
Target: 5'- cGACG--GCGGCCUCGuuuUCGGCCAcGGUg -3' miRNA: 3'- -CUGUagCGUUGGAGU---AGCUGGU-CUAg -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 5289 | 0.69 | 0.67292 |
Target: 5'- cGGCGUUGuCGGCCacggCGUCGAuauuuuCCAGGUCg -3' miRNA: 3'- -CUGUAGC-GUUGGa---GUAGCU------GGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 7545 | 0.66 | 0.852208 |
Target: 5'- cGCA-CGCuGgCUCG-CGGCCGGGUCg -3' miRNA: 3'- cUGUaGCGuUgGAGUaGCUGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 8348 | 0.67 | 0.794407 |
Target: 5'- ----cCGCGGCCUgGUCGAuagcgugcgUCAGAUCg -3' miRNA: 3'- cuguaGCGUUGGAgUAGCU---------GGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 8561 | 0.66 | 0.852208 |
Target: 5'- gGGCAUCGacgugGACUaugcCGACCAGAUCg -3' miRNA: 3'- -CUGUAGCg----UUGGaguaGCUGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 8671 | 0.67 | 0.781947 |
Target: 5'- cGGCAUUGCGugccgcgcgcACCUCGgcguugguguacUGGCCGGGUCg -3' miRNA: 3'- -CUGUAGCGU----------UGGAGUa-----------GCUGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 9648 | 0.7 | 0.603314 |
Target: 5'- cGAgGUgCGCAACgUguUCGACCGGAUg -3' miRNA: 3'- -CUgUA-GCGUUGgAguAGCUGGUCUAg -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 9756 | 0.66 | 0.861003 |
Target: 5'- gGGCG-CGCuucGCCUCGaaGuCCAGAUCg -3' miRNA: 3'- -CUGUaGCGu--UGGAGUagCuGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 11390 | 0.66 | 0.852208 |
Target: 5'- --gGUgGCGACCUgAUgGGCCAGgGUCu -3' miRNA: 3'- cugUAgCGUUGGAgUAgCUGGUC-UAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 14120 | 0.66 | 0.861003 |
Target: 5'- -uUAUCGCcguaCUCGUCGGCCAGc-- -3' miRNA: 3'- cuGUAGCGuug-GAGUAGCUGGUCuag -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 14819 | 0.66 | 0.843155 |
Target: 5'- cGGCggCGCuGCCU--UCGcCCAGGUCg -3' miRNA: 3'- -CUGuaGCGuUGGAguAGCuGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 16602 | 0.69 | 0.684443 |
Target: 5'- aGCAagGCGGCCUguacggcuaUAUCGGCCAGAc- -3' miRNA: 3'- cUGUagCGUUGGA---------GUAGCUGGUCUag -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 17853 | 0.71 | 0.580212 |
Target: 5'- -cCAcCGUGGCCUCGUCGcCCAGGUa -3' miRNA: 3'- cuGUaGCGUUGGAGUAGCuGGUCUAg -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 18626 | 0.69 | 0.69591 |
Target: 5'- cGCGagCGCGGCCUCcacCGACguGAUCg -3' miRNA: 3'- cUGUa-GCGUUGGAGua-GCUGguCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 18887 | 0.7 | 0.614911 |
Target: 5'- cGCAaaauUCGCAGCUUCcugCGccGCCAGAUCa -3' miRNA: 3'- cUGU----AGCGUUGGAGua-GC--UGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 18975 | 0.75 | 0.351592 |
Target: 5'- cGCGggCGcCGACCUCAUCGACCuGAUg -3' miRNA: 3'- cUGUa-GC-GUUGGAGUAGCUGGuCUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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