miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26448 3' -51 NC_005357.1 + 38541 0.71 0.545941
Target:  5'- cGACAUCGagaaauACCUCGUCGAgCGcGUCa -3'
miRNA:   3'- -CUGUAGCgu----UGGAGUAGCUgGUcUAG- -5'
26448 3' -51 NC_005357.1 + 38231 0.66 0.869533
Target:  5'- cGACGugcUCGCGGCCaacaugcccgcCAUCGAggcggccggcuaCCAGAUCg -3'
miRNA:   3'- -CUGU---AGCGUUGGa----------GUAGCU------------GGUCUAG- -5'
26448 3' -51 NC_005357.1 + 29794 0.66 0.861003
Target:  5'- cGGCAuacgcugucUCGCGcucgauGCCgaugaaUCGUCGACCAGAa- -3'
miRNA:   3'- -CUGU---------AGCGU------UGG------AGUAGCUGGUCUag -5'
26448 3' -51 NC_005357.1 + 9756 0.66 0.861003
Target:  5'- gGGCG-CGCuucGCCUCGaaGuCCAGAUCg -3'
miRNA:   3'- -CUGUaGCGu--UGGAGUagCuGGUCUAG- -5'
26448 3' -51 NC_005357.1 + 4891 0.66 0.861003
Target:  5'- cGACG--GCGGCCUCGuuuUCGGCCAcGGUg -3'
miRNA:   3'- -CUGUagCGUUGGAGU---AGCUGGU-CUAg -5'
26448 3' -51 NC_005357.1 + 1175 0.66 0.861003
Target:  5'- cACAuagucUCGCcGCCgggGUCGGCCGGGUUg -3'
miRNA:   3'- cUGU-----AGCGuUGGag-UAGCUGGUCUAG- -5'
26448 3' -51 NC_005357.1 + 14120 0.66 0.861003
Target:  5'- -uUAUCGCcguaCUCGUCGGCCAGc-- -3'
miRNA:   3'- cuGUAGCGuug-GAGUAGCUGGUCuag -5'
26448 3' -51 NC_005357.1 + 11390 0.66 0.852208
Target:  5'- --gGUgGCGACCUgAUgGGCCAGgGUCu -3'
miRNA:   3'- cugUAgCGUUGGAgUAgCUGGUC-UAG- -5'
26448 3' -51 NC_005357.1 + 7545 0.66 0.852208
Target:  5'- cGCA-CGCuGgCUCG-CGGCCGGGUCg -3'
miRNA:   3'- cUGUaGCGuUgGAGUaGCUGGUCUAG- -5'
26448 3' -51 NC_005357.1 + 14819 0.66 0.843155
Target:  5'- cGGCggCGCuGCCU--UCGcCCAGGUCg -3'
miRNA:   3'- -CUGuaGCGuUGGAguAGCuGGUCUAG- -5'
26448 3' -51 NC_005357.1 + 805 0.67 0.828162
Target:  5'- cGGCGaCGCGccgcgcccagcccuuGCCgaaCGUCGGCCAGGUg -3'
miRNA:   3'- -CUGUaGCGU---------------UGGa--GUAGCUGGUCUAg -5'
26448 3' -51 NC_005357.1 + 29010 0.71 0.556162
Target:  5'- cGACGUagGCGACCaggCGccgcgcuUCGGCCAGGUCg -3'
miRNA:   3'- -CUGUAg-CGUUGGa--GU-------AGCUGGUCUAG- -5'
26448 3' -51 NC_005357.1 + 17853 0.71 0.580212
Target:  5'- -cCAcCGUGGCCUCGUCGcCCAGGUa -3'
miRNA:   3'- cuGUaGCGUUGGAGUAGCuGGUCUAg -5'
26448 3' -51 NC_005357.1 + 32298 0.7 0.626526
Target:  5'- cGCGUugCGCGACCUCAUCGccgccaucaagGCCGGcGUCc -3'
miRNA:   3'- cUGUA--GCGUUGGAGUAGC-----------UGGUC-UAG- -5'
26448 3' -51 NC_005357.1 + 28327 0.69 0.671766
Target:  5'- cGGCGUCGgAcucgauggccuugGCCUCGUCGGgCAGcgCg -3'
miRNA:   3'- -CUGUAGCgU-------------UGGAGUAGCUgGUCuaG- -5'
26448 3' -51 NC_005357.1 + 5289 0.69 0.67292
Target:  5'- cGGCGUUGuCGGCCacggCGUCGAuauuuuCCAGGUCg -3'
miRNA:   3'- -CUGUAGC-GUUGGa---GUAGCU------GGUCUAG- -5'
26448 3' -51 NC_005357.1 + 27359 0.69 0.718624
Target:  5'- cGACcUCGCAGCaCUCGuccagccauUCGGCCAGcaaAUCc -3'
miRNA:   3'- -CUGuAGCGUUG-GAGU---------AGCUGGUC---UAG- -5'
26448 3' -51 NC_005357.1 + 8671 0.67 0.781947
Target:  5'- cGGCAUUGCGugccgcgcgcACCUCGgcguugguguacUGGCCGGGUCg -3'
miRNA:   3'- -CUGUAGCGU----------UGGAGUa-----------GCUGGUCUAG- -5'
26448 3' -51 NC_005357.1 + 8561 0.66 0.852208
Target:  5'- gGGCAUCGacgugGACUaugcCGACCAGAUCg -3'
miRNA:   3'- -CUGUAGCg----UUGGaguaGCUGGUCUAG- -5'
26448 3' -51 NC_005357.1 + 18975 0.75 0.351592
Target:  5'- cGCGggCGcCGACCUCAUCGACCuGAUg -3'
miRNA:   3'- cUGUa-GC-GUUGGAGUAGCUGGuCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.