miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26448 5' -49.4 NC_005357.1 + 2736 1.08 0.002948
Target:  5'- gAAAAUCUGCUCGAUGCGUACCGCAAGa -3'
miRNA:   3'- -UUUUAGACGAGCUACGCAUGGCGUUC- -5'
26448 5' -49.4 NC_005357.1 + 5692 0.71 0.662094
Target:  5'- cAAAAUCUcGCUCGAUGacagACCGCcAGa -3'
miRNA:   3'- -UUUUAGA-CGAGCUACgca-UGGCGuUC- -5'
26448 5' -49.4 NC_005357.1 + 9699 0.67 0.856262
Target:  5'- ----gCUGCUCaacGUGUACCGCGAc -3'
miRNA:   3'- uuuuaGACGAGcuaCGCAUGGCGUUc -5'
26448 5' -49.4 NC_005357.1 + 28063 0.71 0.626505
Target:  5'- -cGGUCUGCUCGAacaGCGggcaggugGCCGCGGc -3'
miRNA:   3'- uuUUAGACGAGCUa--CGCa-------UGGCGUUc -5'
26448 5' -49.4 NC_005357.1 + 31931 0.76 0.355617
Target:  5'- gGGGGUCuUGCacggCGAggGCGUGCCGCAGGa -3'
miRNA:   3'- -UUUUAG-ACGa---GCUa-CGCAUGGCGUUC- -5'
26448 5' -49.4 NC_005357.1 + 37919 0.7 0.685679
Target:  5'- gAGGcgCUGCUCGGUGC--GCCagGCGAGg -3'
miRNA:   3'- -UUUuaGACGAGCUACGcaUGG--CGUUC- -5'
26448 5' -49.4 NC_005357.1 + 39475 0.67 0.865123
Target:  5'- -cGAUCacgUGCUCGA--CGUGCCGCGc- -3'
miRNA:   3'- uuUUAG---ACGAGCUacGCAUGGCGUuc -5'
26448 5' -49.4 NC_005357.1 + 39746 0.7 0.732019
Target:  5'- cGGcgCUGCUCGG-GCGUGCCGa--- -3'
miRNA:   3'- uUUuaGACGAGCUaCGCAUGGCguuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.