miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26449 3' -48.8 NC_005357.1 + 20059 0.66 0.95466
Target:  5'- aGCAaGUUGGCGAGUucuacgcggacaucgGCGGCCUGcccgaaaccUGGGu -3'
miRNA:   3'- -CGUcUAGUUGCUUA---------------UGUCGGAC---------ACCC- -5'
26449 3' -48.8 NC_005357.1 + 10948 0.66 0.952853
Target:  5'- gGCAGuugcGCGGcgACAGCCg--GGGa -3'
miRNA:   3'- -CGUCuaguUGCUuaUGUCGGacaCCC- -5'
26449 3' -48.8 NC_005357.1 + 20857 0.66 0.947638
Target:  5'- uGCAGAUCAcCGAcauggacGUGCAGCCg----- -3'
miRNA:   3'- -CGUCUAGUuGCU-------UAUGUCGGacaccc -5'
26449 3' -48.8 NC_005357.1 + 31104 0.66 0.943097
Target:  5'- uGCAGGcCGGCGAGUGguGCgaGauagcgGGGa -3'
miRNA:   3'- -CGUCUaGUUGCUUAUguCGgaCa-----CCC- -5'
26449 3' -48.8 NC_005357.1 + 12258 0.67 0.932114
Target:  5'- aCGGAUCGGCG-GUAguGuCCUGggcGGGu -3'
miRNA:   3'- cGUCUAGUUGCuUAUguC-GGACa--CCC- -5'
26449 3' -48.8 NC_005357.1 + 14647 0.67 0.929768
Target:  5'- aGCGGAUCGGCcgccggcauCAGCCcgGUaGGGg -3'
miRNA:   3'- -CGUCUAGUUGcuuau----GUCGGa-CA-CCC- -5'
26449 3' -48.8 NC_005357.1 + 29977 0.67 0.919886
Target:  5'- gGCAcuGAUgcGCGAacugGUACGGCCUGUcaugccGGGg -3'
miRNA:   3'- -CGU--CUAguUGCU----UAUGUCGGACA------CCC- -5'
26449 3' -48.8 NC_005357.1 + 27390 0.67 0.913304
Target:  5'- cGUGGAaagCAACGc--GC-GCCUGUGGGc -3'
miRNA:   3'- -CGUCUa--GUUGCuuaUGuCGGACACCC- -5'
26449 3' -48.8 NC_005357.1 + 7740 0.67 0.908513
Target:  5'- cGCAGAUCGccgccaaagaacggcGCGuGUACggcaaggAGCCggcGUGGGu -3'
miRNA:   3'- -CGUCUAGU---------------UGCuUAUG-------UCGGa--CACCC- -5'
26449 3' -48.8 NC_005357.1 + 36273 0.68 0.899217
Target:  5'- cGCuGGgaaGAUGAcgGCGGCgaGUGGGu -3'
miRNA:   3'- -CGuCUag-UUGCUuaUGUCGgaCACCC- -5'
26449 3' -48.8 NC_005357.1 + 8098 0.69 0.83131
Target:  5'- gGCGG--CAAgGAcgGCGGCCcuaUGUGGGa -3'
miRNA:   3'- -CGUCuaGUUgCUuaUGUCGG---ACACCC- -5'
26449 3' -48.8 NC_005357.1 + 33767 0.69 0.821655
Target:  5'- aGCAGccgcugcacaCAGCGAGUacggcGCGGCCUG-GGGc -3'
miRNA:   3'- -CGUCua--------GUUGCUUA-----UGUCGGACaCCC- -5'
26449 3' -48.8 NC_005357.1 + 4882 0.69 0.818714
Target:  5'- cCAGcgCGGCGAcgGCGGCCUcguuuucggccacgGUGGa -3'
miRNA:   3'- cGUCuaGUUGCUuaUGUCGGA--------------CACCc -5'
26449 3' -48.8 NC_005357.1 + 24310 0.7 0.780908
Target:  5'- -gAGGUCGGCGA--GCAGCCgc-GGGu -3'
miRNA:   3'- cgUCUAGUUGCUuaUGUCGGacaCCC- -5'
26449 3' -48.8 NC_005357.1 + 40557 0.71 0.72504
Target:  5'- cGCGGAUCGucuGCGggUucuggucgagcgcGCGGCCcUG-GGGg -3'
miRNA:   3'- -CGUCUAGU---UGCuuA-------------UGUCGG-ACaCCC- -5'
26449 3' -48.8 NC_005357.1 + 4143 1.15 0.001442
Target:  5'- cGCAGAUCAACGAAUACAGCCUGUGGGa -3'
miRNA:   3'- -CGUCUAGUUGCUUAUGUCGGACACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.