Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26449 | 5' | -65 | NC_005357.1 | + | 9390 | 0.66 | 0.224598 |
Target: 5'- -gCCGCCC-GCcGCGC-CGACgUGCGc -3' miRNA: 3'- aaGGCGGGcCGaCGCGaGCUGgGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 28303 | 0.66 | 0.224598 |
Target: 5'- ---aGCCUGGC-GCaGUcCGACCCGCGc -3' miRNA: 3'- aaggCGGGCCGaCG-CGaGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 41702 | 0.66 | 0.224598 |
Target: 5'- aUCCGCCag---GCGCUCGACuuggCCGUGg -3' miRNA: 3'- aAGGCGGgccgaCGCGAGCUG----GGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 9282 | 0.66 | 0.221216 |
Target: 5'- -cCCGguacaCCGGCUGCGCauugacuuccucggCGACCUgGCGg -3' miRNA: 3'- aaGGCg----GGCCGACGCGa-------------GCUGGG-CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 35912 | 0.66 | 0.218985 |
Target: 5'- aUCCGCCUcggccagggGGCUGCGgUCuuugucgauGACCaGCGg -3' miRNA: 3'- aAGGCGGG---------CCGACGCgAG---------CUGGgCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 23821 | 0.66 | 0.218985 |
Target: 5'- aUCgGCCCGGUgGCGC-CGGCauggCGCu -3' miRNA: 3'- aAGgCGGGCCGaCGCGaGCUGg---GCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 36159 | 0.66 | 0.213492 |
Target: 5'- gUUCCGCCCcaGCcaaaGCGCcCGGCCCGa- -3' miRNA: 3'- -AAGGCGGGc-CGa---CGCGaGCUGGGCgc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 18120 | 0.66 | 0.208118 |
Target: 5'- -gCCGUCCGGUacgucgaacuUGuCGCcCGGCUCGCGc -3' miRNA: 3'- aaGGCGGGCCG----------AC-GCGaGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 4743 | 0.66 | 0.202861 |
Target: 5'- -gCCGCgcuauCCGGC-GCGCUgGuGCCCGCc -3' miRNA: 3'- aaGGCG-----GGCCGaCGCGAgC-UGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 32785 | 0.66 | 0.202861 |
Target: 5'- gUCCGCCCucGGCaccuCGCUgGugCUGCGc -3' miRNA: 3'- aAGGCGGG--CCGac--GCGAgCugGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 27489 | 0.67 | 0.192692 |
Target: 5'- -gCCGCCgGGCgcgGUGCgccaGGCgCGCGa -3' miRNA: 3'- aaGGCGGgCCGa--CGCGag--CUGgGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 257 | 0.67 | 0.187777 |
Target: 5'- -gUCGCCCGGCaGCGUgaCGguGCCCaGCGa -3' miRNA: 3'- aaGGCGGGCCGaCGCGa-GC--UGGG-CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 11659 | 0.67 | 0.187777 |
Target: 5'- -gCUGCCCGGCgGCcaGCcggCGGCCCuggGCGg -3' miRNA: 3'- aaGGCGGGCCGaCG--CGa--GCUGGG---CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 24475 | 0.67 | 0.17369 |
Target: 5'- aUCgGgCCGGCUGCGCUUcuucaACuuGCGc -3' miRNA: 3'- aAGgCgGGCCGACGCGAGc----UGggCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 12723 | 0.67 | 0.169208 |
Target: 5'- -gUCGCCCGGCccguugGUGCUggGugCCGCGc -3' miRNA: 3'- aaGGCGGGCCGa-----CGCGAg-CugGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 32923 | 0.67 | 0.169208 |
Target: 5'- -cCUGCaCGGCUGCuGUUCGGCCaggGCGa -3' miRNA: 3'- aaGGCGgGCCGACG-CGAGCUGGg--CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 14885 | 0.67 | 0.169208 |
Target: 5'- -gUUGCCCGGCuuucagggucUGCGCggCGAUCUGCu -3' miRNA: 3'- aaGGCGGGCCG----------ACGCGa-GCUGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 41231 | 0.68 | 0.166568 |
Target: 5'- -gCCGUCCGGCgaGCGCcgguauucccggcccUCGACCCa-- -3' miRNA: 3'- aaGGCGGGCCGa-CGCG---------------AGCUGGGcgc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 10749 | 0.68 | 0.164829 |
Target: 5'- -cUCGCCaagGGC-GCGCUCGacuucgGCCCGCa -3' miRNA: 3'- aaGGCGGg--CCGaCGCGAGC------UGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 20608 | 0.68 | 0.164829 |
Target: 5'- cUUCGCCaGGCgGCGUcgcaggucggugUCGGCCUGCGc -3' miRNA: 3'- aAGGCGGgCCGaCGCG------------AGCUGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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