miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26449 5' -65 NC_005357.1 + 15463 0.68 0.160553
Target:  5'- -gUCGUCCGGCaucuuCGC-CGGCCCGCa -3'
miRNA:   3'- aaGGCGGGCCGac---GCGaGCUGGGCGc -5'
26449 5' -65 NC_005357.1 + 42131 0.68 0.140639
Target:  5'- -aCCaUCCGGgUGUGCUUGGCCUGCc -3'
miRNA:   3'- aaGGcGGGCCgACGCGAGCUGGGCGc -5'
26449 5' -65 NC_005357.1 + 31309 0.71 0.091225
Target:  5'- -gUCGCCCGGCUcGUaGCUgGGCCgCGCGc -3'
miRNA:   3'- aaGGCGGGCCGA-CG-CGAgCUGG-GCGC- -5'
26449 5' -65 NC_005357.1 + 34957 0.79 0.021206
Target:  5'- gUgCGCUCGGCggcGUGCUCGAUCCGCGg -3'
miRNA:   3'- aAgGCGGGCCGa--CGCGAGCUGGGCGC- -5'
26449 5' -65 NC_005357.1 + 4109 1.05 0.000171
Target:  5'- gUUCCGCCCGGCUGCGCUCGACCCGCGc -3'
miRNA:   3'- -AAGGCGGGCCGACGCGAGCUGGGCGC- -5'
26449 5' -65 NC_005357.1 + 257 0.67 0.187777
Target:  5'- -gUCGCCCGGCaGCGUgaCGguGCCCaGCGa -3'
miRNA:   3'- aaGGCGGGCCGaCGCGa-GC--UGGG-CGC- -5'
26449 5' -65 NC_005357.1 + 9390 0.66 0.224598
Target:  5'- -gCCGCCC-GCcGCGC-CGACgUGCGc -3'
miRNA:   3'- aaGGCGGGcCGaCGCGaGCUGgGCGC- -5'
26449 5' -65 NC_005357.1 + 35912 0.66 0.218985
Target:  5'- aUCCGCCUcggccagggGGCUGCGgUCuuugucgauGACCaGCGg -3'
miRNA:   3'- aAGGCGGG---------CCGACGCgAG---------CUGGgCGC- -5'
26449 5' -65 NC_005357.1 + 36159 0.66 0.213492
Target:  5'- gUUCCGCCCcaGCcaaaGCGCcCGGCCCGa- -3'
miRNA:   3'- -AAGGCGGGc-CGa---CGCGaGCUGGGCgc -5'
26449 5' -65 NC_005357.1 + 27489 0.67 0.192692
Target:  5'- -gCCGCCgGGCgcgGUGCgccaGGCgCGCGa -3'
miRNA:   3'- aaGGCGGgCCGa--CGCGag--CUGgGCGC- -5'
26449 5' -65 NC_005357.1 + 41231 0.68 0.166568
Target:  5'- -gCCGUCCGGCgaGCGCcgguauucccggcccUCGACCCa-- -3'
miRNA:   3'- aaGGCGGGCCGa-CGCG---------------AGCUGGGcgc -5'
26449 5' -65 NC_005357.1 + 23821 0.66 0.218985
Target:  5'- aUCgGCCCGGUgGCGC-CGGCauggCGCu -3'
miRNA:   3'- aAGgCGGGCCGaCGCGaGCUGg---GCGc -5'
26449 5' -65 NC_005357.1 + 24475 0.67 0.17369
Target:  5'- aUCgGgCCGGCUGCGCUUcuucaACuuGCGc -3'
miRNA:   3'- aAGgCgGGCCGACGCGAGc----UGggCGC- -5'
26449 5' -65 NC_005357.1 + 4743 0.66 0.202861
Target:  5'- -gCCGCgcuauCCGGC-GCGCUgGuGCCCGCc -3'
miRNA:   3'- aaGGCG-----GGCCGaCGCGAgC-UGGGCGc -5'
26449 5' -65 NC_005357.1 + 28303 0.66 0.224598
Target:  5'- ---aGCCUGGC-GCaGUcCGACCCGCGc -3'
miRNA:   3'- aaggCGGGCCGaCG-CGaGCUGGGCGC- -5'
26449 5' -65 NC_005357.1 + 11659 0.67 0.187777
Target:  5'- -gCUGCCCGGCgGCcaGCcggCGGCCCuggGCGg -3'
miRNA:   3'- aaGGCGGGCCGaCG--CGa--GCUGGG---CGC- -5'
26449 5' -65 NC_005357.1 + 10272 0.68 0.148318
Target:  5'- aUCCGCCgaccaucgggcCGGCgUGCGCUUGACgUGgGa -3'
miRNA:   3'- aAGGCGG-----------GCCG-ACGCGAGCUGgGCgC- -5'
26449 5' -65 NC_005357.1 + 9282 0.66 0.221216
Target:  5'- -cCCGguacaCCGGCUGCGCauugacuuccucggCGACCUgGCGg -3'
miRNA:   3'- aaGGCg----GGCCGACGCGa-------------GCUGGG-CGC- -5'
26449 5' -65 NC_005357.1 + 18120 0.66 0.208118
Target:  5'- -gCCGUCCGGUacgucgaacuUGuCGCcCGGCUCGCGc -3'
miRNA:   3'- aaGGCGGGCCG----------AC-GCGaGCUGGGCGC- -5'
26449 5' -65 NC_005357.1 + 32785 0.66 0.202861
Target:  5'- gUCCGCCCucGGCaccuCGCUgGugCUGCGc -3'
miRNA:   3'- aAGGCGGG--CCGac--GCGAgCugGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.