Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26449 | 5' | -65 | NC_005357.1 | + | 31309 | 0.71 | 0.091225 |
Target: 5'- -gUCGCCCGGCUcGUaGCUgGGCCgCGCGc -3' miRNA: 3'- aaGGCGGGCCGA-CG-CGAgCUGG-GCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 32785 | 0.66 | 0.202861 |
Target: 5'- gUCCGCCCucGGCaccuCGCUgGugCUGCGc -3' miRNA: 3'- aAGGCGGG--CCGac--GCGAgCugGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 32923 | 0.67 | 0.169208 |
Target: 5'- -cCUGCaCGGCUGCuGUUCGGCCaggGCGa -3' miRNA: 3'- aaGGCGgGCCGACG-CGAGCUGGg--CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 34957 | 0.79 | 0.021206 |
Target: 5'- gUgCGCUCGGCggcGUGCUCGAUCCGCGg -3' miRNA: 3'- aAgGCGGGCCGa--CGCGAGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 35160 | 0.68 | 0.162251 |
Target: 5'- -aCCGCCgagaagcugcacaaGGCcgGCGacaUCGGCCCGCGc -3' miRNA: 3'- aaGGCGGg-------------CCGa-CGCg--AGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 35912 | 0.66 | 0.218985 |
Target: 5'- aUCCGCCUcggccagggGGCUGCGgUCuuugucgauGACCaGCGg -3' miRNA: 3'- aAGGCGGG---------CCGACGCgAG---------CUGGgCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 36159 | 0.66 | 0.213492 |
Target: 5'- gUUCCGCCCcaGCcaaaGCGCcCGGCCCGa- -3' miRNA: 3'- -AAGGCGGGc-CGa---CGCGaGCUGGGCgc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 36688 | 0.7 | 0.099026 |
Target: 5'- -gCUGCCCGGC-GCGCUgggCGAUCUGUGc -3' miRNA: 3'- aaGGCGGGCCGaCGCGA---GCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 38056 | 0.73 | 0.065491 |
Target: 5'- --gCGCCUGGCUGCGCaUCcGCCUGCc -3' miRNA: 3'- aagGCGGGCCGACGCG-AGcUGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 39689 | 0.68 | 0.148318 |
Target: 5'- --aCGCCCGaGCaGCGC-CGGgCCGCGc -3' miRNA: 3'- aagGCGGGC-CGaCGCGaGCUgGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 41231 | 0.68 | 0.166568 |
Target: 5'- -gCCGUCCGGCgaGCGCcgguauucccggcccUCGACCCa-- -3' miRNA: 3'- aaGGCGGGCCGa-CGCG---------------AGCUGGGcgc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 41702 | 0.66 | 0.224598 |
Target: 5'- aUCCGCCag---GCGCUCGACuuggCCGUGg -3' miRNA: 3'- aAGGCGGgccgaCGCGAGCUG----GGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 42131 | 0.68 | 0.140639 |
Target: 5'- -aCCaUCCGGgUGUGCUUGGCCUGCc -3' miRNA: 3'- aaGGcGGGCCgACGCGAGCUGGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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