miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2645 5' -59.6 NC_001491.2 + 2548 0.69 0.511561
Target:  5'- cGCCAGGCCuCGGGGa--ACAGCugguugucgaugAGCUCc -3'
miRNA:   3'- -CGGUCUGG-GUCCCgucUGUCG------------UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 1353 0.7 0.501948
Target:  5'- cGUCGGGCUCc-GGCAGGCA-CAGCUCc -3'
miRNA:   3'- -CGGUCUGGGucCCGUCUGUcGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 24144 0.7 0.492416
Target:  5'- aGUCAGAaCCAGGGgGGcuACAGCuauAGCUCu -3'
miRNA:   3'- -CGGUCUgGGUCCCgUC--UGUCG---UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 2133 0.7 0.464338
Target:  5'- gGCCAGGuCCCc-GGUcGACAGCAGCa- -3'
miRNA:   3'- -CGGUCU-GGGucCCGuCUGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 113589 0.7 0.464338
Target:  5'- cGCUAGugauucGCgCAGGGCAGugAGCcgcGCUCc -3'
miRNA:   3'- -CGGUC------UGgGUCCCGUCugUCGu--CGAG- -5'
2645 5' -59.6 NC_001491.2 + 27092 0.71 0.446092
Target:  5'- gGCCAGGCCUccgcGGGCGGccCGGCGccGCUCc -3'
miRNA:   3'- -CGGUCUGGGu---CCCGUCu-GUCGU--CGAG- -5'
2645 5' -59.6 NC_001491.2 + 98718 0.71 0.436228
Target:  5'- uGCUAugauuuuGuACCCAGGGCAGGCGGcCAGUa- -3'
miRNA:   3'- -CGGU-------C-UGGGUCCCGUCUGUC-GUCGag -5'
2645 5' -59.6 NC_001491.2 + 109973 0.71 0.428252
Target:  5'- cGCCAGcucccGCUCGGcGGCAGugGCGGCGGCa- -3'
miRNA:   3'- -CGGUC-----UGGGUC-CCGUC--UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 12501 0.71 0.428252
Target:  5'- cGCgGGucCCCGGGGCGGggcggcgucGCGGCGGCg- -3'
miRNA:   3'- -CGgUCu-GGGUCCCGUC---------UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 31271 0.71 0.420363
Target:  5'- aGCCGGcgaaggcuauaccuuCCCcGGGCAGACccgGGCGGCUUc -3'
miRNA:   3'- -CGGUCu--------------GGGuCCCGUCUG---UCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 110429 0.71 0.410841
Target:  5'- cGCCGGGCCCacucccgcuAGGGCGGAUgaGGUGGUg- -3'
miRNA:   3'- -CGGUCUGGG---------UCCCGUCUG--UCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 22492 0.71 0.402301
Target:  5'- -gCAGACUCAGGGCugcuaAGACAgucaacaucacuGCAGCUUa -3'
miRNA:   3'- cgGUCUGGGUCCCG-----UCUGU------------CGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 4391 0.72 0.393875
Target:  5'- gGCCAGGggucCCCGgacGGGguGAgaAGCGGCUCg -3'
miRNA:   3'- -CGGUCU----GGGU---CCCguCUg-UCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 44163 0.72 0.377371
Target:  5'- -aCAGACCCAGcGCGG-CGGCAGC-Cg -3'
miRNA:   3'- cgGUCUGGGUCcCGUCuGUCGUCGaG- -5'
2645 5' -59.6 NC_001491.2 + 1497 0.73 0.322642
Target:  5'- cGUCGGGCuCCAGcagcgccacccGGCAGAacucgcuCAGCAGCUCg -3'
miRNA:   3'- -CGGUCUG-GGUC-----------CCGUCU-------GUCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 32752 0.78 0.173632
Target:  5'- cCCAGGCuaCCGGGGCGGcgGCAGCAGCa- -3'
miRNA:   3'- cGGUCUG--GGUCCCGUC--UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 115394 1.12 0.000706
Target:  5'- cGCCAGACCCAGGGCAGACAGCAGCUCg -3'
miRNA:   3'- -CGGUCUGGGUCCCGUCUGUCGUCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.