Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26450 | 3' | -56.4 | NC_005357.1 | + | 26972 | 0.71 | 0.317464 |
Target: 5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3' miRNA: 3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 9721 | 0.71 | 0.302115 |
Target: 5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3' miRNA: 3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 13874 | 0.71 | 0.302115 |
Target: 5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3' miRNA: 3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8727 | 0.71 | 0.325355 |
Target: 5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3' miRNA: 3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8619 | 0.71 | 0.325355 |
Target: 5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3' miRNA: 3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 27504 | 0.71 | 0.325355 |
Target: 5'- -gGCgGCCUCGGCCGCcagcuucucGGCGCGguCGGGGu -3' miRNA: 3'- gaUG-UGGAGCUGGUG---------CCGCGC--GUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 30407 | 0.71 | 0.341573 |
Target: 5'- -aAgACCUCGccgGCCACGGCcGCGCugcuGGc -3' miRNA: 3'- gaUgUGGAGC---UGGUGCCG-CGCGuu--CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 7960 | 0.71 | 0.309717 |
Target: 5'- uUGC-CCgUGGCCuCGGCGCGCAucGGGu -3' miRNA: 3'- gAUGuGGaGCUGGuGCCGCGCGU--UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 13610 | 0.71 | 0.333392 |
Target: 5'- -cGCaACC-CGACgACGGCGCGCu-GGc -3' miRNA: 3'- gaUG-UGGaGCUGgUGCCGCGCGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 4603 | 0.72 | 0.294658 |
Target: 5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3' miRNA: 3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 7232 | 0.72 | 0.294658 |
Target: 5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3' miRNA: 3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 15812 | 0.73 | 0.240125 |
Target: 5'- uUAC-CCUCGGCCACcacCGCGCAGGa -3' miRNA: 3'- gAUGuGGAGCUGGUGcc-GCGCGUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 22487 | 0.73 | 0.233934 |
Target: 5'- ---uGCCUCGuCCACGGC-CGaCAAGGa -3' miRNA: 3'- gaugUGGAGCuGGUGCCGcGC-GUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 41062 | 0.73 | 0.240125 |
Target: 5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3' miRNA: 3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 28043 | 0.73 | 0.232103 |
Target: 5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3' miRNA: 3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8981 | 0.73 | 0.227878 |
Target: 5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3' miRNA: 3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 36947 | 0.74 | 0.20171 |
Target: 5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3' miRNA: 3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 5607 | 0.74 | 0.204969 |
Target: 5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3' miRNA: 3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 36679 | 0.74 | 0.221955 |
Target: 5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3' miRNA: 3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8058 | 0.74 | 0.224309 |
Target: 5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3' miRNA: 3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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